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Adam Voshall
Adam Voshall
Research Fellow
Verified email at childrens.harvard.edu
Title
Cited by
Cited by
Year
Complementarity to an miRNA seed region is sufficient to induce moderate repression of a target transcript in the unicellular green alga Chlamydomonas reinhardtii
T Yamasaki, A Voshall, EJ Kim, E Moriyama, H Cerutti, T Ohama
The Plant Journal 76 (6), 1045-1056, 2013
512013
Next-generation transcriptome assembly: strategies and performance analysis
A Voshall, EN Moriyama
Bioinformatics in the era of post genomics and big data, 15-36, 2018
372018
Small Interfering RNA–Mediated Translation Repression Alters Ribosome Sensitivity to Inhibition by Cycloheximide in Chlamydomonas reinhardtii
X Ma, EJ Kim, I Kook, F Ma, A Voshall, E Moriyama, H Cerutti
The Plant Cell 25 (3), 985-998, 2013
352013
Identification of AGO3-Associated miRNAs and Computational Prediction of Their Targets in the Green Alga Chlamydomonas reinhardtii
A Voshall, EJ Kim, X Ma, EN Moriyama, H Cerutti
Genetics 200 (1), 105-121, 2015
322015
Next-generation transcriptome assembly and analysis: Impact of ploidy
A Voshall, EN Moriyama
Methods 176, 14-24, 2020
292020
miRNAs in the alga Chlamydomonas reinhardtii are not phylogenetically conserved and play a limited role in responses to nutrient deprivation
A Voshall, EJ Kim, X Ma, T Yamasaki, EN Moriyama, H Cerutti
Scientific reports 7 (1), 5462, 2017
262017
Sterol Biosynthesis in four green algae: A bioinformatic analysis of the ergosterol versus phytosterol decision point
A Voshall, NTM Christie, SL Rose, M Khasin, JL Van Etten, JE Markham, ...
Journal of phycology 57 (4), 1199-1211, 2021
172021
Plant transcriptome assembly: review and benchmarking
S Behera, A Voshall
Bioinformatics, 2022
122022
A consensus-based ensemble approach to improve transcriptome assembly
A Voshall, S Behera, X Li, XH Yu, K Kapil, JS Deogun, J Shanklin, ...
BMC bioinformatics 22, 1-24, 2021
82021
Formal concept analysis applications in bioinformatics
S Roscoe, M Khatri, A Voshall, S Batra, S Kaur, J Deogun
ACM Computing Surveys 55 (8), 1-40, 2022
72022
Bioinformatics in the era of post genomics and big data
A Voshall, EN Moriyama, I Abdurakhmonov
62018
Small RNAs> 26 nt in length associate with AGO1 and are upregulated by nutrient deprivation in the alga Chlamydomonas
Y Li, EJ Kim, A Voshall, EN Moriyama, H Cerutti
The Plant Cell 35 (6), 1868-1887, 2023
52023
Performance comparison and an ensemble approach of transcriptome assembly
S Behera, A Voshall, JS Deogun, EN Moriyama
2017 IEEE international conference on bioinformatics and biomedicine (BIBM …, 2017
52017
Complete Genome Sequence of Geobacter sp. Strain FeAm09, a Moderately Acidophilic Soil Bacterium
P Yadav, S Antony-Babu, E Hayes, OM Healy, D Pan, WH Yang, ...
Microbiology resource announcements 10 (2), 10.1128/mra. 00979-20, 2021
42021
Divergent evolution of extreme production of variant plant monounsaturated fatty acids
L Gan, K Park, J Chai, EM Updike, H Kim, A Voshall, S Behera, XH Yu, ...
Proceedings of the National Academy of Sciences 119 (30), e2201160119, 2022
32022
A consensus-based ensemble approach to improve de novo transcriptome assembly
A Voshall, S Behera, X Li, XH Yu, K Kapil, JS Deogun, J Shanklin, ...
BioRxiv, 2020.06. 08.139964, 2020
32020
Interpretable image classification model using formal concept analysis based classifier
M Khatri, A Voshall, SK Batra, S Kaur, JS Deogun
EPiC Ser Comput 83, 86-95, 2022
12022
Consensus Ensemble Approaches Improve De Novo Transcriptome Assemblies
A Voshall
12018
Pan-cancer analysis reveals multifaceted roles of retrotransposon-fusion RNAs
B Lee, J Park, A Voshall, E Maury, Y Kang, YJ Kim, JY Lee, HR Shim, ...
bioRxiv, 2023
2023
Pan-cancer analysis reveals roles of retrotransposon-fusion RNAs
EA Lee, B Lee, Y Choi, J Park, A Voshall, E Maury, Y Kang, YJ Kim, ...
Cancer Research 83 (7_Supplement), 1122-1122, 2023
2023
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Articles 1–20