| SWISS-MODEL: homology modelling of protein structures and complexes A Waterhouse, M Bertoni, S Bienert, G Studer, G Tauriello, R Gumienny, ... Nucleic acids research 46 (W1), W296-W303, 2018 | 9697 | 2018 |
| SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information M Biasini, S Bienert, A Waterhouse, K Arnold, G Studer, T Schmidt, ... Nucleic acids research 42 (W1), W252-W258, 2014 | 5287 | 2014 |
| Modeling protein quaternary structure of homo-and hetero-oligomers beyond binary interactions by homology M Bertoni, F Kiefer, M Biasini, L Bordoli, T Schwede Scientific reports 7 (1), 10480, 2017 | 797 | 2017 |
| Continuous Automated Model EvaluatiOn (CAMEO) complementing the critical assessment of structure prediction in CASP12 J Haas, A Barbato, D Behringer, G Studer, S Roth, M Bertoni, K Mostaguir, ... Proteins: Structure, Function, and Bioinformatics 86, 387-398, 2018 | 133 | 2018 |
| Extending the small-molecule similarity principle to all levels of biology with the Chemical Checker M Duran-Frigola, E Pauls, O Guitart-Pla, M Bertoni, V Alcalde, D Amat, ... Nature Biotechnology 38 (9), 1087-1096, 2020 | 91 | 2020 |
| Assessment of protein assembly prediction in CASP12 A Lafita, S Bliven, A Kryshtafovych, M Bertoni, B Monastyrskyy, JM Duarte, ... Proteins: Structure, Function, and Bioinformatics 86, 247-256, 2018 | 59 | 2018 |
| The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases SIB Swiss Institute of Bioinformatics Members Nucleic acids research 44 (D1), D27-D37, 2016 | 51 | 2016 |
| Bioactivity descriptors for uncharacterized chemical compounds M Bertoni, M Duran-Frigola, P Badia-i-Mompel, E Pauls, M Orozco-Ruiz, ... Nature Communications 12 (1), 3932, 2021 | 44 | 2021 |
| A community challenge for a pancancer drug mechanism of action inference from perturbational profile data EF Douglass, RJ Allaway, B Szalai, W Wang, T Tian, A Fernández-Torras, ... Cell Reports Medicine 3 (1), 2022 | 39 | 2022 |
| Introducing “best single template” models as reference baseline for the Continuous Automated Model Evaluation (CAMEO) J Haas, R Gumienny, A Barbato, F Ackermann, G Tauriello, M Bertoni, ... Proteins: Structure, Function, and Bioinformatics 87 (12), 1378-1387, 2019 | 33 | 2019 |
| Integrating and formatting biomedical data as pre-calculated knowledge graph embeddings in the Bioteque A Fernández-Torras, M Duran-Frigola, M Bertoni, M Locatelli, P Aloy Nature Communications 13 (1), 5304, 2022 | 31 | 2022 |
| Formatting biological big data for modern machine learning in drug discovery M Duran‐Frigola, A Fernández‐Torras, M Bertoni, P Aloy Wiley Interdisciplinary Reviews: Computational Molecular Science 9 (6), e1408, 2019 | 25 | 2019 |
| Modeling of protein tertiary and quaternary structures based on evolutionary information G Studer, G Tauriello, S Bienert, AM Waterhouse, M Bertoni, L Bordoli, ... Computational Methods in Protein Evolution, 301-316, 2019 | 20 | 2019 |
| Heer Florian T, de Beer Tjaart AP, Rempfer Christine, Bordoli Lorenza, Lepore Rosalba, Schwede Torsten. SWISS-MODEL: homology modelling of protein structures and complexes W Andrew, B Martino, B Stefan, S Gabriel, T Gerardo, G Rafal Nucleic Acids Res 46, W296-W303, 2018 | 14 | 2018 |
| A non-deterministic approach to forecasting the trophic evolution of lakes R Bertoni, M Bertoni, G Morabito, M Rogora, C Callieri J. Limnol 75 (s1), 242-252, 2016 | 6 | 2016 |
| Bioactivity profile similarities to expand the repertoire of COVID-19 drugs M Duran-Frigola, M Bertoni, R Blanco, V Martínez, E Pauls, V Alcalde, ... Journal of Chemical Information and Modeling 60 (12), 5730-5734, 2020 | 5 | 2020 |
| Publisher correction: Extending the small-molecule similarity principle to all levels of biology with the chemical checker M Duran-Frigola, E Pauls, O Guitart-Pla, M Bertoni, V Alcalde, D Amat, ... Nature Biotechnology 38 (9), 1098-1098, 2020 | 4 | 2020 |
| Bioactivity descriptors for uncharacterized compounds M Bertoni, M Duran-Frigola, P Badia-i-Mompel, E Pauls, M Orozco-Ruiz, ... BiorXiV, 2020.07. 21.214197, 2020 | 4 | 2020 |
| DynBench3D, a web-resource to dynamically generate benchmark sets of large heteromeric protein complexes M Bertoni, P Aloy Journal of molecular biology 430 (21), 4431-4438, 2018 | 4 | 2018 |
| Genet: a graph-based genetic programming framework for the reverse engineering of gene regulatory networks L Vanneschi, M Mondini, M Bertoni, A Ronchi, M Stefano Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics …, 2012 | 3 | 2012 |
Torsten SchwedeUniversity of Basel, Biozentrum & SIB Swiss Institute of BioinformaticsVerified email at unibas.ch
