Xiaohui Xie
Xiaohui Xie
Professor of Computer Science, University of California, Irvine
Verified email at uci.edu - Homepage
Title
Cited by
Cited by
Year
A bivalent chromatin structure marks key developmental genes in embryonic stem cells
BE Bernstein, TS Mikkelsen, X Xie, M Kamal, DJ Huebert, J Cuff, B Fry, ...
Cell 125 (2), 315-326, 2006
53462006
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
TS Mikkelsen, M Ku, DB Jaffe, B Issac, E Lieberman, G Giannoukos, ...
Nature 448 (7153), 553-560, 2007
43062007
Genome sequence, comparative analysis and haplotype structure of the domestic dog
K Lindblad-Toh, CM Wade, TS Mikkelsen, EK Karlsson, DB Jaffe, ...
Nature 438 (7069), 803-819, 2005
25922005
Systematic discovery of regulatory motifs in human promoters and 3′ UTRs by comparison of several mammals
X Xie, J Lu, EJ Kulbokas, TR Golub, V Mootha, K Lindblad-Toh, ...
Nature 434 (7031), 338-345, 2005
22512005
Genome-wide detection and characterization of positive selection in human populations
PC Sabeti, P Varilly, B Fry, J Lohmueller, E Hostetter, C Cotsapas, X Xie, ...
Nature 449 (7164), 913-918, 2007
17902007
Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium
LJ Ma, HC Van Der Does, KA Borkovich, JJ Coleman, MJ Daboussi, ...
Nature 464 (7287), 367-373, 2010
13332010
A high-resolution map of human evolutionary constraint using 29 mammals
K Lindblad-Toh, M Garber, O Zuk, MF Lin, BJ Parker, S Washietl, ...
Nature 478 (7370), 476-482, 2011
10462011
Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains
M Ku, RP Koche, E Rheinbay, EM Mendenhall, M Endoh, TS Mikkelsen, ...
PLoS genetics 4 (10), e1000242, 2008
10252008
Errα and Gabpa/b specify PGC-1α-dependent oxidative phosphorylation gene expression that is altered in diabetic muscle
VK Mootha, C Handschin, D Arlow, X Xie, JS Pierre, S Sihag, W Yang, ...
Proceedings of the National Academy of Sciences 101 (17), 6570-6575, 2004
7422004
Distinguishing protein-coding and noncoding genes in the human genome
M Clamp, B Fry, M Kamal, X Xie, J Cuff, MF Lin, M Kellis, K Lindblad-Toh, ...
Proceedings of the National Academy of Sciences 104 (49), 19428-19433, 2007
7202007
Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences
TS Mikkelsen, MJ Wakefield, B Aken, CT Amemiya, JL Chang, S Duke, ...
Nature 447 (7141), 167-177, 2007
7162007
Co-occurrence feature learning for skeleton based action recognition using regularized deep LSTM networks
W Zhu, C Lan, J Xing, W Zeng, Y Li, L Shen, X Xie
Proceedings of the AAAI conference on artificial intelligence 30 (1), 2016
6152016
Principal component analysis
J Li, RR Linear
Multivariate Statistics; Springer: Berlin, Germany 487, 163-183, 2014
6152014
DANN: a deep learning approach for annotating the pathogenicity of genetic variants
D Quang, Y Chen, X Xie
Bioinformatics 31 (5), 761-763, 2015
6132015
A mammalian organelle map by protein correlation profiling
LJ Foster, CL de Hoog, Y Zhang, Y Zhang, X Xie, VK Mootha, M Mann
Cell 125 (1), 187-199, 2006
5932006
DanQ: a hybrid convolutional and recurrent deep neural network for quantifying the function of DNA sequences
D Quang, X Xie
Nucleic acids research 44 (11), e107-e107, 2016
4892016
Systematic identification of human mitochondrial disease genes through integrative genomics
S Calvo, M Jain, X Xie, SA Sheth, B Chang, OA Goldberger, A Spinazzola, ...
Nature genetics 38 (5), 576-582, 2006
4242006
Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites
X Xie, TS Mikkelsen, A Gnirke, K Lindblad-Toh, M Kellis, ES Lander
Proceedings of the National Academy of Sciences 104 (17), 7145-7150, 2007
3692007
Identifying novel constrained elements by exploiting biased substitution patterns
M Garber, M Guttman, M Clamp, MC Zody, N Friedman, X Xie
Bioinformatics 25 (12), i54-i62, 2009
3232009
Gene expression inference with deep learning
Y Chen, Y Li, R Narayan, A Subramanian, X Xie
Bioinformatics 32 (12), 1832-1839, 2016
2992016
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Articles 1–20