| Profile-QSAR: A Novel meta-QSAR Method that Combines Activities across the Kinase Family To Accurately Predict Affinity, Selectivity, and Cellular Activity E Martin, P Mukherjee, D Sullivan, J Jansen Journal of chemical information and modeling 51 (8), 1942-1956, 2011 | 72 | 2011 |
| Linking phenotype to kinase: identification of a novel benzoxaborole hinge-binding motif for kinase inhibition and development of high-potency rho kinase inhibitors T Akama, C Dong, C Virtucio, D Sullivan, Y Zhou, YK Zhang, F Rock, ... Journal of Pharmacology and Experimental Therapeutics 347 (3), 615-625, 2013 | 61 | 2013 |
| AutoShim: Empirically Corrected Scoring Functions for Quantitative Docking with a Crystal Structure and IC50 Training Data EJ Martin, DC Sullivan Journal of chemical information and modeling 48 (4), 861-872, 2008 | 45 | 2008 |
| Conformation spaces of proteins DC Sullivan, ID Kuntz Proteins: Structure, Function, and Bioinformatics 42 (4), 495-511, 2001 | 43 | 2001 |
| Protein folding as biased conformational diffusion DC Sullivan, ID Kuntz The Journal of Physical Chemistry B 106 (12), 3255-3262, 2002 | 38 | 2002 |
| Surrogate AutoShim: predocking into a universal ensemble kinase receptor for three dimensional activity prediction, very quickly, without a crystal structure EJ Martin, DC Sullivan Journal of chemical information and modeling 48 (4), 873-881, 2008 | 36 | 2008 |
| Distributions in protein conformation space: implications for structure prediction and entropy DC Sullivan, ID Kuntz Biophysical journal 87 (1), 113-120, 2004 | 30 | 2004 |
| Early rapid identification of in vivo rat metabolites of AN6414, a novel boron-containing PDE4 inhibitor by QTRAP LC/MS/MS to support drug discovery W Bu, T Akama, S Chanda, D Sullivan, V Ciaravino, K Jarnagin, Y Freund, ... Journal of pharmaceutical and biomedical analysis 70, 344-353, 2012 | 26 | 2012 |
| Information content of molecular structures DC Sullivan, T Aynechi, VA Voelz, ID Kuntz Biophysical journal 85 (1), 174-190, 2003 | 21 | 2003 |
| Exploiting structure–activity relationships in docking DC Sullivan, EJ Martin Journal of chemical information and modeling 48 (4), 817-830, 2008 | 7 | 2008 |
| Boron-containing small molecules T Akama, K Jarnagin, YK Zhang, Y Zhou, JJ Plattner, DC Sullivan US Patent 9,493,490, 2016 | 6 | 2016 |
| Quantifying polypeptide conformational space: sensitivity to conformation and ensemble definition DC Sullivan, C Lim The Journal of Physical Chemistry B 110 (33), 16707-16717, 2006 | 5 | 2006 |
| Toward absolute density of states calculations for proteins DC Sullivan, C Lim The Journal of Physical Chemistry B 110 (24), 12125-12128, 2006 | 5 | 2006 |
| Configurational entropy of proteins: Covariance matrix versus cumulative distribution calculations DC Sullivan, C Lim Journal of the Chinese Chemical Society 51 (5B), 1209-1219, 2004 | 4 | 2004 |
| " Surrogate docking" with AUTOSHIM ensembles: Using PLS/MAGNET to customize scoring functions for an ensemble of diverse kinases to predict the activity of new kinases, even … E Martin, D Sullivan ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 232, 85-85, 2006 | 2* | 2006 |
| Boron-based Rho-associated kinase (ROCK) inhibitor: A novel approach to interact with the hinge region and the structure-activity relationships T Akama, Y Zhou, D Sullivan, R Kimura, F Rock, M Mohan, C Dong, ... ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 243, 2012 | | 2012 |
| 2-D and 3-D adaptive scoring functions for iterative kinase medium-throughput screening (ikMTS) with Profile-QSAR and AutoShim EJ Martin, DC Sullivan, P Mukherjee ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 237, 2009 | | 2009 |
| COMP 106-Iterative kinase medium-throughput screening (ikMTS) with AutoShim and Profile-QSAR for kinase lead discovery E Martin, D Sullivan ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 236, 2008 | | 2008 |
| Conformation Spaces of Proteins and Implications for Protein Folding DC Sullivan University of California, San Francisco, 2001 | | 2001 |
