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Vishnu Dileep
Vishnu Dileep
Post-Doctoral Fellow (Tsai Lab), The Picower Institute for Learning and Memory, MIT
Verified email at mit.edu
Title
Cited by
Cited by
Year
Expanded encyclopaedias of DNA elements in the human and mouse genomes
JE Moore, MJ Purcaro, HE Pratt, CB Epstein, N Shoresh, J Adrian, T Kawli, ...
Nature 583 (7818), 699-710, 2020
11362020
Topologically associating domains are stable units of replication-timing regulation
BD Pope, T Ryba, V Dileep, F Yue, W Wu, O Denas, DL Vera, Y Wang, ...
Nature 515 (7527), 402-405, 2014
9172014
Integrative detection and analysis of structural variation in cancer genomes
JR Dixon, J Xu, V Dileep, Y Zhan, F Song, VT Le, GG Yardımcı, ...
Nature genetics 50 (10), 1388-1398, 2018
3102018
Mouse Rif1 is a key regulator of the replication‐timing programme in mammalian cells
D Cornacchia, V Dileep, JP Quivy, R Foti, F Tili, R Santarella‐Mellwig, ...
The EMBO journal 31 (18), 3678-3690, 2012
2642012
Nuclear architecture organized by Rif1 underpins the replication-timing program
R Foti, S Gnan, D Cornacchia, V Dileep, A Bulut-Karslioglu, S Diehl, ...
Molecular cell 61 (2), 260-273, 2016
1772016
Topologically associating domains and their long-range contacts are established during early G1 coincident with the establishment of the replication-timing program
V Dileep, F Ay, J Sima, DL Vera, WS Noble, DM Gilbert
Genome research 25 (8), 1104-1113, 2015
1752015
Identifying cis elements for spatiotemporal control of mammalian DNA replication
J Sima, A Chakraborty, V Dileep, M Michalski, KN Klein, NP Holcomb, ...
Cell 176 (4), 816-830. e18, 2019
1612019
An integrative ENCODE resource for cancer genomics
J Zhang, D Lee, V Dhiman, P Jiang, J Xu, P McGillivray, H Yang, J Liu, ...
Nature communications 11 (1), 3696, 2020
1032020
Mapping the epigenomic and transcriptomic interplay during memory formation and recall in the hippocampal engram ensemble
A Marco, HS Meharena, V Dileep, RM Raju, J Davila-Velderrain, ...
Nature neuroscience 23 (12), 1606-1617, 2020
1012020
Single-cell replication profiling to measure stochastic variation in mammalian replication timing
V Dileep, DM Gilbert
Nature communications, 2018
872018
Chromatin-interaction compartment switch at developmentally regulated chromosomal domains reveals an unusual principle of chromatin folding
S Takebayashi, V Dileep, T Ryba, JH Dennis, DM Gilbert
Proceedings of the National Academy of Sciences 109 (31), 12574-12579, 2012
762012
Large-scale chromatin structure–function relationships during the cell cycle and development: insights from replication timing
V Dileep, JC Rivera-Mulia, J Sima, DM Gilbert
Cold Spring Harbor symposia on quantitative biology 80, 53-63, 2015
692015
Down-syndrome-induced senescence disrupts the nuclear architecture of neural progenitors
HS Meharena, A Marco, V Dileep, ER Lockshin, GY Akatsu, J Mullahoo, ...
Cell Stem Cell 29 (1), 116-130. e7, 2022
432022
Murine esBAF chromatin remodeling complex subunits BAF250a and Brg1 are necessary to maintain and reprogram pluripotency-specific replication timing of select replication domains
S Takebayashi, I Lei, T Ryba, T Sasaki, V Dileep, D Battaglia, X Gao, ...
Epigenetics & chromatin 6, 1-12, 2013
332013
Neurons burdened by DNA double-strand breaks incite microglia activation through antiviral-like signaling in neurodegeneration
GM Welch, CA Boix, E Schmauch, J Davila-Velderrain, MB Victor, ...
Science Advances 8 (39), eabo4662, 2022
302022
Neuronal DNA double-strand breaks lead to genome structural variations and 3D genome disruption in neurodegeneration
V Dileep, CA Boix, H Mathys, A Marco, GM Welch, HS Meharena, A Loon, ...
Cell 186 (20), 4404-4421. e20, 2023
242023
High-throughput single-cell epigenomic profiling by targeted insertion of promoters (TIP-seq)
DA Bartlett, V Dileep, T Handa, Y Ohkawa, H Kimura, S Henikoff, ...
Journal of Cell Biology 220 (12), e202103078, 2021
242021
Rapid irreversible transcriptional reprogramming in human stem cells accompanied by discordance between replication timing and chromatin compartment
V Dileep, KA Wilson, C Marchal, X Lyu, PA Zhao, B Li, A Poulet, ...
Stem cell reports 13 (1), 193-206, 2019
242019
Epigenomic dissection of Alzheimer’s disease pinpoints causal variants and reveals epigenome erosion
X Xiong, BT James, CA Boix, YP Park, K Galani, MB Victor, N Sun, L Hou, ...
Cell 186 (20), 4422-4437. e21, 2023
222023
Perspectives on ENCODE
F Abascal, R Acosta, NJ Addleman, J Adrian, V Afzal, B Aken, JA Akiyama
Nature 583 (7818), 693-699, 2020
152020
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