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Ryan Suderman
Ryan Suderman
Immunetrics, Inc.
Verified email at immunetrics.com - Homepage
Title
Cited by
Cited by
Year
Fundamental trade-offs between information flow in single cells and cellular populations
R Suderman, JA Bachman, A Smith, PK Sorger, EJ Deeds
Proceedings of the National Academy of Sciences 114 (22), 5755-5760, 2017
1252017
Machines vs. ensembles: effective MAPK signaling through heterogeneous sets of protein complexes
R Suderman, EJ Deeds
PLoS computational biology 9 (10), e1003278, 2013
632013
PyBioNetFit and the biological property specification language
ED Mitra, R Suderman, J Colvin, A Ionkov, A Hu, HM Sauro, RG Posner, ...
IScience 19, 1012-1036, 2019
402019
Preassembled GPCR signaling complexes mediate distinct cellular responses to ultralow ligand concentrations
S Civciristov, AM Ellisdon, R Suderman, CK Pon, BA Evans, O Kleifeld, ...
Science signaling 11 (551), eaan1188, 2018
382018
Generalizing Gillespie’s direct method to enable network-free simulations
R Suderman, ED Mitra, YT Lin, KE Erickson, S Feng, WS Hlavacek
Bulletin of mathematical biology 81 (8), 2822-2848, 2019
202019
Modeling cell line-specific recruitment of signaling proteins to the insulin-like growth factor 1 receptor
KE Erickson, OS Rukhlenko, M Shahinuzzaman, KP Slavkova, YT Lin, ...
PLoS computational biology 15 (1), e1006706, 2019
122019
Intrinsic limits of information transmission in biochemical signalling motifs
R Suderman, EJ Deeds
Interface Focus 8 (6), 20180039, 2018
112018
PyBioNetFit and the biological property specification language. iScience. 2019; 19: 1012–1036
ED Mitra, R Suderman, J Colvin, A Ionkov, A Hu, HM Sauro, RG Posner, ...
PyBioNetFit is a tool for model parameter estimation, uncertainty …, 0
7
TRuML: a translator for rule-based modeling languages
R Suderman, WS Hlavacek
Proceedings of the 8th ACM International Conference on Bioinformatics …, 2017
62017
Understanding the dynamics of scaffold-mediated signaling
R Suderman, A Schauer, EJ Deeds
bioRxiv, 167205, 2017
42017
A step-by-step guide to using BioNetFit
WS Hlavacek, JA Csicsery-Ronay, LR Baker, MC Ramos Álamo, A Ionkov, ...
Modeling Biomolecular Site Dynamics: Methods and Protocols, 391-419, 2019
32019
PyBioNetFit
E Mitra, R Suderman, A Ionkov, W Hlavacek
Los Alamos National Laboratory (LANL), Los Alamos, NM (United States), 2018
12018
Modeling Biomolecular Site Dynamics
WS Hlavacek, J Csicsery-Ronay, LR Baker, MDCR Álamo, A Ionkov, ...
12018
The Noise is the Signal: Information Flow in Single Cells and Cellular Populations
R Suderman, J Bachman, A Smith, P Sorger, EJ Deeds
10th Annual q-bio Conference, Nashville, TN, 0
1
Using RuleBuilder to graphically define and visualize BioNetGen-language patterns and reaction rules
R Suderman, GM Fricke, WS Hlavacek
Modeling Biomolecular Site Dynamics: Methods and Protocols, 33-42, 2019
2019
Modeling cell activation at ultra-low ligand concentrations
RT Suderman, WS Hlavacek
Los Alamos National Laboratory (LANL), Los Alamos, NM (United States), 2018
2018
High dose of EGF ligand leads to greater EGFR degradation via Rab7 activation
CC Palsuledesai, T Shideler, R Suderman, T Shi, CD Nicora, RD Smith, ...
MOLECULAR BIOLOGY OF THE CELL 28, 2017
2017
Heterogeneity and Decision-Making in Cellular Signaling Networks
R Suderman
University of Kansas, 2016
2016
Phenotypic Properties of Scaffold-Based Signaling Paradigms
R Suderman, A Schauer, EJ Deeds
Biophysical Journal 108 (2), 614a, 2015
2015
A theoretical analysis of the potential influence of ITAM pairs on Syk recruitment dynamics
R Suderman, SL Schwartz, DS Lidke, WS Hlavacek
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Articles 1–20