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Douglas Densmore
Douglas Densmore
Tegan Family Distinguished Fellow, Professor of Electrical and Computer Eng., Boston University
Verified email at bu.edu - Homepage
Title
Cited by
Cited by
Year
Genetic circuit design automation
AAK Nielsen, BS Der, J Shin, P Vaidyanathan, V Paralanov, ...
Science 352 (6281), aac7341, 2016
8302016
Functional optimization of gene clusters by combinatorial design and assembly
MJ Smanski, S Bhatia, D Zhao, YJ Park, L BA Woodruff, G Giannoukos, ...
Nature biotechnology 32 (12), 1241-1249, 2014
3032014
The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology
M Galdzicki, KP Clancy, E Oberortner, M Pocock, JY Quinn, CA Rodriguez, ...
Nature biotechnology 32 (6), 545-550, 2014
2822014
A platform-based taxonomy for ESL design
D Densmore, R Passerone
IEEE Design & Test of Computers 23 (5), 359-374, 2006
2402006
Eugene–a domain specific language for specifying and constraining synthetic biological parts, devices, and systems
L Bilitchenko, A Liu, S Cheung, E Weeding, B Xia, M Leguia, JC Anderson, ...
PloS one 6 (4), e18882, 2011
1602011
A next-generation design framework for platform-based design
A Davare, D Densmore, T Meyerowitz, A Pinto, A Sangiovanni-Vincentelli, ...
Conference on using hardware design and verification languages (DVCon) 152, 2007
1532007
CIDAR MoClo: Improved MoClo Assembly Standard and New E. coli Part Library Enable Rapid Combinatorial Design for Synthetic and Traditional Biology
SV Iverson, TL Haddock, J Beal, DM Densmore
ACS synthetic biology 5 (1), 99-103, 2016
1392016
An end-to-end workflow for engineering of biological networks from high-level specifications
J Beal, R Weiss, D Densmore, A Adler, E Appleton, J Babb, S Bhatia, ...
ACS synthetic biology 1 (8), 317-331, 2012
1132012
DeviceEditor visual biological CAD canvas
J Chen, D Densmore, TS Ham, JD Keasling, NJ Hillson
Journal of biological engineering 6 (1), 1-12, 2012
1042012
metroII: A design environment for cyber-physical systems
A Davare, D Densmore, L Guo, R Passerone, AL Sangiovanni-Vincentelli, ...
ACM Transactions on Embedded Computing Systems (TECS) 12 (1s), 1-31, 2013
852013
Sharing structure and function in biological design with SBOL 2.0
N Roehner, J Beal, K Clancy, B Bartley, G Misirli, R Grunberg, ...
ACS synthetic biology 5 (6), 498-506, 2016
832016
Algorithms for automated DNA assembly
D Densmore, THC Hsiau, JT Kittleson, W DeLoache, C Batten, ...
Nucleic acids research 38 (8), 2607-2616, 2010
752010
Interactive assembly algorithms for molecular cloning
E Appleton, J Tao, T Haddock, D Densmore
Nature methods 11 (6), 657-662, 2014
652014
Developer's and User's Guide to Clotho v2. 0: A Software Platform for the Creation of Synthetic Biological Systems
B Xia, S Bhatia, B Bubenheim, M Dadgar, D Densmore, JC Anderson
Methods in enzymology 498, 97-135, 2011
652011
Design automation in synthetic biology
E Appleton, C Madsen, N Roehner, D Densmore
Cold Spring Harbor perspectives in biology 9 (4), a023978, 2017
642017
Genetic circuit design automation for yeast
Y Chen, S Zhang, EM Young, TS Jones, D Densmore, CA Voigt
Nature Microbiology 5 (11), 1349-1360, 2020
622020
Automated selection of synthetic biology parts for genetic regulatory networks
F Yaman, S Bhatia, A Adler, D Densmore, J Beal
ACS synthetic biology 1 (8), 332-344, 2012
622012
Pigeon: a design visualizer for synthetic biology
S Bhatia, D Densmore
ACS synthetic biology 2 (6), 348-350, 2013
592013
Performance tuning of microfluidic flow-focusing droplet generators
A Lashkaripour, C Rodriguez, L Ortiz, D Densmore
Lab on a Chip 19 (6), 1041-1053, 2019
512019
Essential information for synthetic DNA sequences
J Peccoud, JC Anderson, D Chandran, D Densmore, M Galdzicki, ...
Nature biotechnology 29 (1), 22-22, 2011
512011
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