Adelene Sim
Adelene Sim
Duke-NUS; National Cancer Centre Singapore
Verified email at duke-nus.edu.sg
Title
Cited by
Cited by
Year
In Vivo Mapping of Eukaryotic RNA Interactomes Reveals Principles of Higher-Order Organization and Regulation
YW Jong Ghut Ashley Aw, Yang Shen, Andreas Wilm, Miao Sun, Xin Ni Lim, Kum ...
Molecular Cell 62 (4), 603-617, 2016
2042016
Salt dependence of the radius of gyration and flexibility of single-stranded DNA in solution probed by small-angle x-ray scattering
AYL Sim, J Lipfert, D Herschlag, S Doniach
Physical Review E 86 (2), 021901, 2012
1172012
Modeling nucleic acids
AYL Sim, P Minary, M Levitt
Current opinion in structural biology 22 (3), 273-278, 2012
962012
Mixing and matching detergents for membrane protein NMR structure determination
L Columbus, J Lipfert, K Jambunathan, DA Fox, AYL Sim, S Doniach, ...
Journal of the American Chemical Society 131 (21), 7320-7326, 2009
962009
Dynamic charge interactions create surprising rigidity in the ER/K α-helical protein motif
S Sivaramakrishnan, BJ Spink, AYL Sim, S Doniach, JA Spudich
Proceedings of the National Academy of Sciences 105 (36), 13356-13361, 2008
922008
Fully differentiable coarse-grained and all-atom knowledge-based potentials for RNA structure evaluation
J Bernauer, X Huang, AYL Sim, M Levitt
Rna 17 (6), 1066-1075, 2011
902011
Structure mapping of dengue and Zika viruses reveals functional long-range interactions
RG Huber, XN Lim, WC Ng, AYL Sim, HX Poh, Y Shen, SY Lim, ...
Nature communications 10 (1), 1-13, 2019
612019
Dissecting electrostatic screening, specific ion binding, and ligand binding in an energetic model for glycine riboswitch folding
J Lipfert, AYL Sim, D Herschlag, S Doniach
Rna 16 (4), 708-719, 2010
552010
Modeling and design by hierarchical natural moves
AYL Sim, M Levitt, P Minary
Proceedings of the National Academy of Sciences 109 (8), 2890-2895, 2012
532012
Photoluminescence of hydrothermally epitaxied ZnO films
AYL Sim, GKL Goh, S Tripathy, D Andeen, FF Lange
Electrochimica acta 52 (8), 2933-2937, 2007
382007
Electrostatics of nucleic acid folding under conformational constraint
PC Anthony, AYL Sim, VB Chu, S Doniach, SM Block, D Herschlag
Journal of the American Chemical Society 134 (10), 4607-4614, 2012
352012
In vitro selection of mutant HDM2 resistant to Nutlin inhibition
SJ Wei, T Joseph, AYL Sim, L Yurlova, K Zolghadr, D Lane, C Verma, ...
PloS one 8 (4), e62564, 2013
342013
Clustering to identify RNA conformations constrained by secondary structure
AYL Sim, M Levitt
Proceedings of the National Academy of Sciences 108 (9), 3590-3595, 2011
292011
R248Q mutation—Beyond p53‐DNA binding
JWK Ng, D Lama, S Lukman, DP Lane, CS Verma, AYL Sim
Proteins: Structure, Function, and Bioinformatics 83 (12), 2240-2250, 2015
212015
Mechanism of enhanced immature dengue virus attachment to endosomal membrane induced by prM antibody
M Wirawan, G Fibriansah, JK Marzinek, XX Lim, TS Ng, AYL Sim, ...
Structure 27 (2), 253-267. e8, 2019
202019
Mechanism of stapled peptide binding to MDM2: possible consequences for peptide design
AYL Sim, T Joseph, DP Lane, C Verma
Journal of chemical theory and computation 10 (4), 1753-1761, 2014
172014
Targeting YAP/TAZ-TEAD protein-protein interactions using fragment-based and computational modeling approaches
HYK Kaan, AYL Sim, SKJ Tan, C Verma, H Song
PLoS One 12 (6), e0178381, 2017
152017
Nucleic acid polymeric properties and electrostatics: Directly comparing theory and simulation with experiment
AYL Sim
Advances in colloid and interface science 232, 49-56, 2016
102016
How does a hydrocarbon staple affect peptide hydrophobicity?
AYL Sim, C Verma
Journal of computational chemistry 36 (10), 773-784, 2015
102015
The role of gelsolin domain 3 in familial amyloidosis (Finnish type)
H Zorgati, M Larsson, W Ren, AYL Sim, J Gettemans, JM Grimes, W Li, ...
Proceedings of the National Academy of Sciences 116 (28), 13958-13963, 2019
92019
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Articles 1–20