Adelene Sim
Adelene Sim
Duke-NUS; National Cancer Centre Singapore
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Cited by
Cited by
In Vivo Mapping of Eukaryotic RNA Interactomes Reveals Principles of Higher-Order Organization and Regulation
YW Jong Ghut Ashley Aw, Yang Shen, Andreas Wilm, Miao Sun, Xin Ni Lim, Kum ...
Molecular Cell 62 (4), 603-617, 2016
Salt dependence of the radius of gyration and flexibility of single-stranded DNA in solution probed by small-angle x-ray scattering
AYL Sim, J Lipfert, D Herschlag, S Doniach
Physical Review E 86 (2), 021901, 2012
Modeling nucleic acids
AYL Sim, P Minary, M Levitt
Current opinion in structural biology 22 (3), 273-278, 2012
Dynamic charge interactions create surprising rigidity in the ER/K α-helical protein motif
S Sivaramakrishnan, BJ Spink, AYL Sim, S Doniach, JA Spudich
Proceedings of the National Academy of Sciences 105 (36), 13356-13361, 2008
Mixing and matching detergents for membrane protein NMR structure determination
L Columbus, J Lipfert, K Jambunathan, DA Fox, AYL Sim, S Doniach, ...
Journal of the American Chemical Society 131 (21), 7320-7326, 2009
Fully differentiable coarse-grained and all-atom knowledge-based potentials for RNA structure evaluation
J Bernauer, X Huang, AYL Sim, M Levitt
Rna 17 (6), 1066-1075, 2011
Structure mapping of dengue and Zika viruses reveals functional long-range interactions
RG Huber, XN Lim, WC Ng, AYL Sim, HX Poh, Y Shen, SY Lim, ...
Nature communications 10 (1), 1-13, 2019
Dissecting electrostatic screening, specific ion binding, and ligand binding in an energetic model for glycine riboswitch folding
J Lipfert, AYL Sim, D Herschlag, S Doniach
Rna 16 (4), 708-719, 2010
Modeling and design by hierarchical natural moves
AYL Sim, M Levitt, P Minary
Proceedings of the National Academy of Sciences 109 (8), 2890-2895, 2012
Photoluminescence of hydrothermally epitaxied ZnO films
AYL Sim, GKL Goh, S Tripathy, D Andeen, FF Lange
Electrochimica acta 52 (8), 2933-2937, 2007
Electrostatics of nucleic acid folding under conformational constraint
PC Anthony, AYL Sim, VB Chu, S Doniach, SM Block, D Herschlag
Journal of the American Chemical Society 134 (10), 4607-4614, 2012
In vitro selection of mutant HDM2 resistant to Nutlin inhibition
SJ Wei, T Joseph, AYL Sim, L Yurlova, K Zolghadr, D Lane, C Verma, ...
PloS one 8 (4), e62564, 2013
Mechanism of enhanced immature dengue virus attachment to endosomal membrane induced by prM antibody
M Wirawan, G Fibriansah, JK Marzinek, XX Lim, TS Ng, AYL Sim, ...
Structure 27 (2), 253-267. e8, 2019
Clustering to identify RNA conformations constrained by secondary structure
AYL Sim, M Levitt
Proceedings of the National Academy of Sciences 108 (9), 3590-3595, 2011
R248Q mutation—Beyond p53‐DNA binding
JWK Ng, D Lama, S Lukman, DP Lane, CS Verma, AYL Sim
Proteins: Structure, Function, and Bioinformatics 83 (12), 2240-2250, 2015
Targeting YAP/TAZ-TEAD protein-protein interactions using fragment-based and computational modeling approaches
HYK Kaan, AYL Sim, SKJ Tan, C Verma, H Song
PLoS One 12 (6), e0178381, 2017
The role of gelsolin domain 3 in familial amyloidosis (Finnish type)
H Zorgati, M Larsson, W Ren, AYL Sim, J Gettemans, JM Grimes, W Li, ...
Proceedings of the National Academy of Sciences 116 (28), 13958-13963, 2019
Mechanism of stapled peptide binding to MDM2: possible consequences for peptide design
AYL Sim, T Joseph, DP Lane, C Verma
Journal of Chemical Theory and Computation 10 (4), 1753-1761, 2014
Topology independent comparison of RNA 3D structures using the CLICK algorithm
MN Nguyen, AYL Sim, Y Wan, MS Madhusudhan, C Verma
Nucleic acids research 45 (1), e5-e5, 2017
Nucleic acid polymeric properties and electrostatics: Directly comparing theory and simulation with experiment
Advances in Colloid and Interface Science 232, 49-56, 2016
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