| BEAST 2: a software platform for Bayesian evolutionary analysis R Bouckaert, J Heled, D Kühnert, T Vaughan, CH Wu, D Xie, MA Suchard, ... PLoS computational biology 10 (4), e1003537, 2014 | 6466 | 2014 |
| BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis R Bouckaert, TG Vaughan, J Barido-Sottani, S Duchêne, M Fourment, ... PLoS computational biology 15 (4), e1006650, 2019 | 3219 | 2019 |
| Birth–death skyline plot reveals temporal changes of epidemic spread in HIV and hepatitis C virus (HCV) T Stadler, D Kühnert, S Bonhoeffer, AJ Drummond Proceedings of the National Academy of Sciences, 2012 | 550 | 2012 |
| Analysis of 3800-year-old Yersinia pestis genomes suggests Bronze Age origin for bubonic plague MA Spyrou, RI Tukhbatova, CC Wang, AA Valtueña, AK Lankapalli, ... Nature communications 9 (1), 2234, 2018 | 233 | 2018 |
| The contrasting phylodynamics of human influenza B viruses D Vijaykrishna, EC Holmes, U Joseph, M Fourment, YCF Su, R Halpin, ... Elife 4, e05055, 2015 | 221 | 2015 |
| Origin of modern syphilis and emergence of a pandemic Treponema pallidum cluster N Arora, VJ Schuenemann, G Jäger, A Peltzer, A Seitz, A Herbig, ... Nature microbiology 2 (1), 1-6, 2016 | 181 | 2016 |
| Phylodynamics with migration: a computational framework to quantify population structure from genomic data D Kühnert, T Stadler, TG Vaughan, AJ Drummond Molecular biology and evolution 33 (8), 2102-2116, 2016 | 157 | 2016 |
| Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research F Hufsky, K Lamkiewicz, A Almeida, A Aouacheria, C Arighi, A Bateman, ... Briefings in bioinformatics 22 (2), 642-663, 2021 | 151 | 2021 |
| Efficient Bayesian inference under the structured coalescent TG Vaughan, D Kühnert, A Popinga, D Welch, AJ Drummond Bioinformatics 30 (16), 2272-2279, 2014 | 144 | 2014 |
| Simultaneous reconstruction of evolutionary history and epidemiological dynamics from viral sequences with the birth-death SIR model D Kühnert, T Stadler, TG Vaughan, AJ Drummond J. R. Soc. Interface 6 May 2014, http://rsif.royalsocietypublishing.org …, 2013 | 140 | 2013 |
| Neolithic and medieval virus genomes reveal complex evolution of hepatitis B B Krause-Kyora, J Susat, FM Key, D Kühnert, E Bosse, A Immel, C Rinne, ... Elife 7, e36666, 2018 | 132 | 2018 |
| The relationship between transmission time and clustering methods in Mycobacterium tuberculosis epidemiology CJ Meehan, P Moris, TA Kohl, J Pečerska, S Akter, M Merker, C Utpatel, ... EBioMedicine 37, 410-416, 2018 | 128 | 2018 |
| Taming the BEAST—A community teaching material resource for BEAST 2 J Barido-Sottani, V Bošková, LD Plessis, D Kühnert, C Magnus, V Mitov, ... Systematic biology 67 (1), 170-174, 2018 | 112 | 2018 |
| Insights into the Early Epidemic Spread of Ebola in Sierra Leone Provided by Viral Sequence Data T Stadler, D Kühnert, DA Rasmussen, L du Plessis PLOS Currents Outbreaks, 2014 | 110 | 2014 |
| Influenza A Virus Migration and Persistence in North American Wild Birds J Bahl, S Krauss, D Kühnert, M Fourment, G Raven, et al PLoS Pathogens 9 (8), e1003570, 2013 | 109 | 2013 |
| Phylogenetic and epidemic modeling of rapidly evolving infectious diseases D Kühnert, CH Wu, AJ Drummond Infection, genetics and evolution 11 (8), 1825-1841, 2011 | 109 | 2011 |
| Emergence of human-adapted Salmonella enterica is linked to the Neolithization process FM Key, C Posth, LR Esquivel-Gomez, R Hübler, MA Spyrou, ... Nature ecology & evolution 4 (3), 324-333, 2020 | 103 | 2020 |
| The source of the Black Death in fourteenth-century central Eurasia MA Spyrou, L Musralina, GA Gnecchi Ruscone, A Kocher, PG Borbone, ... Nature 606 (7915), 718-724, 2022 | 98 | 2022 |
| In-host evolution of Staphylococcus epidermidis in a pacemaker-associated endocarditis resulting in increased antibiotic tolerance V Dengler Haunreiter, M Boumasmoud, N Häffner, D Wipfli, N Leimer, ... Nature communications 10 (1), 1149, 2019 | 84 | 2019 |
| Ten millennia of hepatitis B virus evolution A Kocher, L Papac, R Barquera, FM Key, MA Spyrou, R Hübler, ... Science 374 (6564), 182-188, 2021 | 80 | 2021 |
Alexei J. DrummondProfessor of Computational Biology, University of AucklandVerified email at cs.auckland.ac.nz
