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Arzu Uyar
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Year
Effect of intracellular loop 3 on intrinsic dynamics of human beta2-adrenergic receptor
O Ozcan, A Uyar, P Doruker, ED Akten
BMC Structural Biology 13 (29), 2013
352013
Membrane-mediated ligand unbinding of the PK-11195 ligand from TSPO
T Dixon, A Uyar, S Ferguson-Miller, A Dickson
Biophysical Journal, 2020
312020
Features of Large Hinge-Bending Conformational Transitions. Prediction of Closed Structure from Open State
A Uyar, N Kantarci-Carsibasi, T Haliloglu, P Doruker
Biophysical Journal 106 (12), 2656-2666, 2014
262014
The elastic network model reveals a consistent picture on intrinsic functional dynamics of type II restriction endonucleases
A Uyar, O Kurkcuoglu, L Nilsson, P Doruker
Physical biology 8 (5), 056001, 2011
162011
Role of Pseudoisocytidine Tautomerization in Triplex-Forming Oligonucleotides: In Silico and in Vitro Studies
YD Hartono, YV Pabon-Martinez, A Uyar, J Wengel, KE Lundin, R Zain, ...
ACS Omega 2 (5), 2165-2177, 2017
132017
Long-Range Changes in Neurolysin Dynamics Upon Inhibitor Binding
A Uyar, VT Karamyan, A Dickson
Journal of chemical theory and computation 14 (1), 444-452, 2017
112017
Conformational dynamics of bacterial trigger factor in apo and ribosome-bound states.
MT Can, Z Kurkcuoglu, G Ezeroglu, A Uyar, O Kurkcuoglu, P Doruker
PloS one 12 (4), e0176262, 2017
82017
Identification and characterization of two structurally related dipeptides that enhance catalytic efficiency of neurolysin
ST Jayaraman, JT Kocot, SH Esfahani, NJ Wangler, A Uyar, Y Mechref, ...
Journal of Pharmacology and Experimental Therapeutics, 2021
72021
Structural Insights into Lethal Contractural Syndrome Type 3 (LCCS3) Caused by a Missense Mutation of PIP5Kγ
X Zeng, A Uyar, D Sui, N Donyapour, D Wu, A Dickson, J Hu
Biochemical Journal, BCJ20180326, 2018
42018
Perturbation of ACE2 Structural Ensembles by SARS-CoV-2 Spike Protein Binding
A Uyar, A Dickson
JCTC, 2021
32021
Perturbation of ACE2 structural ensembles by SARS-CoV-2 spike protein binding
A Uyar, A Dickson
bioRxiv, 2021
32021
Rational design of thermophilic CYP119 for progesterone hydroxylation by in silico mutagenesis and docking screening
EK Doğru, G Güralp, A Uyar, NB Surmeli
Journal of Molecular Graphics and Modelling 118, 108323, 2023
22023
Structure-function relationship of restriction endonucleases
P Doruker, O Kurkcuoglu, A Uyar, L Nilsson
The Febs Journal 273, 253, 2006
12006
How Does a Ligand Explore the Deep Channel of Neurolysin? A Conformational Dynamics Study with Wexplore and Elastic Network Modeling
A Uyar, V Karamyan, A Dickson
Biophysical Journal 112 (3), 355a, 2017
2017
Targeted conformational transitions of large and multimeric proteins by an efficient elastic network based technique
Y Yesiltepe, D Findik, A Uyar, D Turgut, R Ozisik, T Haliloglu, P Doruker
Protein Science 24, 226, 2015
2015
Structure and stability of DNA duplex upon binding of triplex-forming oligonucleotide
A Villa, A Uyar, Y Xu, L Nilsson
EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS 44, S244-S244, 2015
2015
A computational study on bacterial trigger factor and ribosome dynamics
MT Can, G Ezeroglu, Z Kurkcuoglu, A Uyar, O Kurkcuoglu, P Doruker
EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS 44, S205-S205, 2015
2015
Dynamical features of NF-kappa B via molecular dynamics simulations and elastic network models
A Uyar, V Pande, C Mura, JA Mccammon, P Doruker, L Nilsson
EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS 44, S175-S175, 2015
2015
Targeted Conformational Transitions of Multimeric Proteins by Monte Carlo Simulations Combined with Collective Anisotropic Network Model Modes
Y Yesiltepe, A Uyar, D Turgut, T Haliloglu, P Doruker, R Ozisik
Biophysical Journal 108 (2), 211a, 2015
2015
Assessing Dynamic Features of NF-κB via Molecular Dynamics Simulations and Elastic Network Model
A Uyar, V Pande, C Mura, JA McCammon, P Doruker, L Nilsson
Biophysical Journal 106 (2), 252a, 2014
2014
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Articles 1–20