| Genomics and epidemiology of the P. 1 SARS-CoV-2 lineage in Manaus, Brazil NR Faria, TA Mellan, C Whittaker, IM Claro, DS Candido, S Mishra, ... Science 372 (6544), 815-821, 2021 | 1291 | 2021 |
| Assessing transmissibility of SARS-CoV-2 lineage B. 1.1. 7 in England E Volz, S Mishra, M Chand, JC Barrett, R Johnson, L Geidelberg, ... Nature 593 (7858), 266-269, 2021 | 902 | 2021 |
| Transmission of SARS-CoV-2 Lineage B. 1.1. 7 in England: Insights from linking epidemiological and genetic data E Volz, S Mishra, M Chand, JC Barrett, R Johnson, L Geidelberg, ... MedRxiv, 2020.12. 30.20249034, 2021 | 579 | 2021 |
| Age groups that sustain resurging COVID-19 epidemics in the United States M Monod, A Blenkinsop, X Xi, D Hebert, S Bershan, S Tietze, M Baguelin, ... Science 371 (6536), eabe8372, 2021 | 253 | 2021 |
| Global minimum estimates of children affected by COVID-19-associated orphanhood and deaths of caregivers: a modelling study SD Hillis, HJT Unwin, Y Chen, L Cluver, L Sherr, PS Goldman, ... The Lancet 398 (10298), 391-402, 2021 | 210 | 2021 |
| Model criticism based on likelihood-free inference, with an application to protein network evolution O Ratmann, C Andrieu, C Wiuf, S Richardson Proceedings of the National Academy of Sciences 106 (26), 10576-10581, 2009 | 190 | 2009 |
| Inference for nonlinear epidemiological models using genealogies and time series DA Rasmussen, O Ratmann, K Koelle PLoS computational biology 7 (8), e1002136, 2011 | 180 | 2011 |
| State-level tracking of COVID-19 in the United States HJT Unwin, S Mishra, VC Bradley, A Gandy, TA Mellan, H Coupland, ... Nature communications 11 (1), 6189, 2020 | 154 | 2020 |
| COVID-19–associated orphanhood and caregiver death in the United States SD Hillis, A Blenkinsop, A Villaveces, FB Annor, L Liburd, GM Massetti, ... Pediatrics 148 (6), 2021 | 150 | 2021 |
| Using likelihood-free inference to compare evolutionary dynamics of the protein networks of H. pylori and P. falciparum O Ratmann, O Jørgensen, T Hinkley, M Stumpf, S Richardson, C Wiuf PLoS Computational Biology 3 (11), e230, 2007 | 141 | 2007 |
| Report 21: Estimating COVID-19 cases and reproduction number in Brazil TA Mellan, HH Hoeltgebaum, S Mishra, C Whittaker, RP Schnekenberg, ... | 133 | 2020 |
| Improved algorithmic complexity for the 3SEQ recombination detection algorithm HM Lam, O Ratmann, MF Boni Molecular biology and evolution 35 (1), 247-251, 2018 | 133 | 2018 |
| PHYLOSCANNER: inferring transmission from within-and between-host pathogen genetic diversity C Wymant, M Hall, O Ratmann, D Bonsall, T Golubchik, M de Cesare, ... Molecular biology and evolution 35 (3), 719-733, 2018 | 127 | 2018 |
| Sources of HIV infection among men having sex with men and implications for prevention O Ratmann, A Van Sighem, D Bezemer, A Gavryushkina, S Jurriaans, ... Science translational medicine 8 (320), 320ra2-320ra2, 2016 | 124 | 2016 |
| Changing composition of SARS-CoV-2 lineages and rise of Delta variant in England S Mishra, S Mindermann, M Sharma, C Whittaker, TA Mellan, T Wilton, ... EClinicalMedicine 39, 2021 | 96 | 2021 |
| Cultural conformity generates extremely stable traditions in bird song RF Lachlan, O Ratmann, S Nowicki Nature communications 9 (1), 2417, 2018 | 81 | 2018 |
| Impact of cross-protective vaccines on epidemiological and evolutionary dynamics of influenza N Arinaminpathy, O Ratmann, K Koelle, SL Epstein, GE Price, C Viboud, ... Proceedings of the National Academy of Sciences 109 (8), 3173-3177, 2012 | 76 | 2012 |
| Dispersion of the HIV-1 epidemic in men who have sex with men in the Netherlands: a combined mathematical model and phylogenetic analysis D Bezemer, A Cori, O Ratmann, A van Sighem, HS Hermanides, ... PLoS medicine 12 (11), e1001898, 2015 | 68 | 2015 |
| Phylogenetic tools for generalized HIV-1 epidemics: findings from the PANGEA-HIV methods comparison O Ratmann, EB Hodcroft, M Pickles, A Cori, M Hall, S Lycett, C Colijn, ... Molecular biology and evolution 34 (1), 185-203, 2017 | 67 | 2017 |
| Explaining rapid reinfections in multiple-wave influenza outbreaks: Tristan da Cunha 1971 epidemic as a case study A Camacho, S Ballesteros, AL Graham, F Carrat, O Ratmann, B Cazelles Proceedings of the Royal Society B: Biological Sciences 278 (1725), 3635-3643, 2011 | 65 | 2011 |
Christophe FraserPandemic Sciences Institute, Nuffield Department of Medicine, University of OxfordVerified email at bdi.ox.ac.uk
