| Binding of berberine to human telomeric quadruplex–spectroscopic, calorimetric and molecular modeling studies A Arora, C Balasubramanian, N Kumar, S Agrawal, RP Ojha, S Maiti The FEBS journal 275 (15), 3971-3983, 2008 | 131 | 2008 |
| Energetics of the human Tel-22 quadruplex− telomestatin interaction: a molecular dynamics study S Agrawal, RP Ojha, S Maiti The Journal of Physical Chemistry B 112 (22), 6828-6836, 2008 | 67 | 2008 |
| Binding free energy calculation with QM/MM hybrid methods for Abl-Kinase inhibitor KD Dubey, RP Ojha Journal of biological physics 37, 69-78, 2011 | 45 | 2011 |
| Role of pH on dimeric interactions for DENV envelope protein: an insight from molecular dynamics study KD Dubey, AK Chaubey, RP Ojha Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1814 (12), 1796-1801, 2011 | 27 | 2011 |
| DNA Bending and Sequence-Dependent Backbone Conformation: NMR and Computer Experiments RP Ojha, Dhingra, M. M., MH Sarma, M Shibata, M Farrar, CJ Turner, ... European Journal Of Biochemistry/FEBS 265 (1), 35-53, 1999 | 26 | 1999 |
| Targeting domain-III hinging of dengue envelope (DENV-2) protein by MD simulations, docking and free energy calculations KD Dubey, G Tiwari, RP Ojha Journal of molecular modeling 23 (4), 102, 2017 | 20 | 2017 |
| Stability of trimeric DENV envelope protein at low and neutral pH: an insight from MD study KD Dubey, AK Chaubey, RP Ojha Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1834 (1), 53-64, 2013 | 18 | 2013 |
| Stability and free energy calculation of LNA modified quadruplex: a molecular dynamics study AK Chaubey, KD Dubey, RP Ojha Journal of computer-aided molecular design 26, 289-299, 2012 | 17 | 2012 |
| Theoretical Study of Ordering in Liquid Crystals with the Help of Intermolecular Interaction Energy Calculations Part l-Anisaldehyde Azine NK Sanyal, M Roychoudhury, RP Ojha, SR Shukla, KR Ruhela Molecular Crystals and Liquid Crystals 112 (3-4), 189-196, 1984 | 17 | 1984 |
| Biological activity of the nucleoside analogs: A theoretical study NK Sanyal, M Roychoudhury, RP Ojha International Journal of Quantum Chemistry 20 (1), 159-166, 1981 | 16 | 1981 |
| Conformational flexibility, binding energy, role of salt bridge and alanine-mutagenesis for c-Abl kinase complex KD Dubey, RP Ojha Journal of molecular modeling 18, 1679-1689, 2012 | 14 | 2012 |
| Hydration pattern of A4T4 and T4A4 DNA: A molecular dynamics study C Balasubramanian, RP Ojha, S Maiti Biochemical and biophysical research communications 355 (4), 1081-1086, 2007 | 14 | 2007 |
| Molecular basis of drug action of some antibiotics NK Sanyal, M Roychoudhury, RP Ojha Journal of theoretical biology 110 (4), 505-521, 1984 | 14 | 1984 |
| Triplex hydration: nanosecond molecular dynamics simulation of the solvated triplex formed by mixed sequences RP Ojha, RK Tiwari Nucleic acids research 31 (21), 6373-6380, 2003 | 13 | 2003 |
| Structure of an anti-HIV-1 hammerhead ribozyme complex with a 17-mer DNA substrate analog of HIV-1 gag RNA and a mechanism for the cleavage reaction: 750 MHz NMR and computer … RP Ojha, MM Dhingra, MH Sarma, YP Myer, RF Setlik, M Shibata, ... Journal of Biomolecular Structure and Dynamics 15 (2), 185-215, 1997 | 11 | 1997 |
| Influence of PNA containing 8-aza-7-deazaadenine on structure stability and binding affinity of PNA· DNA duplex: insights from thermodynamics, counter ion, hydration and … SK Gupta, S Sur, RP Ojha, V Tandon Molecular BioSystems 9 (7), 1958-1971, 2013 | 10 | 2013 |
| Sampling the structure of the noncanonical lin-4: lin-14 microRNA: mRNA complex by molecular dynamics simulations C Balasubramanian, RP Ojha, S Maiti, A Desideri The Journal of Physical Chemistry B 114 (49), 16443-16449, 2010 | 9 | 2010 |
| Viewpoint 5—conformational studies on anti-AIDS drugs A Saran, RP Ojha Journal of Molecular Structure: THEOCHEM 284 (3), 223-234, 1993 | 9 | 1993 |
| Interaction energy studies on pyrazolopyrimidine nucleoside antibiotics—A theoretical study: Oxoformycin B RP Ojha, M Roychoudhury, NK Sanyal Journal of Biosciences 12, 311-320, 1987 | 9 | 1987 |
| Interaction energy studies of an antimetabolite 8-azaguanine during transcription NK Sanyal, M Roychoudhury, RP Ojha Journal of theoretical biology 116 (2), 195-199, 1985 | 9 | 1985 |
