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Raheleh Salari
Raheleh Salari
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Year
Phylogenetic ctDNA analysis depicts early-stage lung cancer evolution
C Abbosh, NJ Birkbak, GA Wilson, M Jamal-Hanjani, T Constantin, ...
Nature 545 (7655), 446-451, 2017
17272017
Analysis of plasma cell-free DNA by ultradeep sequencing in patients with stages I to III colorectal cancer
T Reinert, TV Henriksen, E Christensen, S Sharma, R Salari, H Sethi, ...
JAMA oncology 5 (8), 1124-1131, 2019
7032019
Early detection of metastatic relapse and monitoring of therapeutic efficacy by ultra-deep sequencing of plasma cell-free DNA in patients with urothelial bladder carcinoma
E Christensen, K Birkenkamp-Demtröder, H Sethi, S Shchegrova, R Salari, ...
Journal of Clinical Oncology 37 (18), 1547-1557, 2019
4132019
Personalized detection of circulating tumor DNA antedates breast cancer metastatic recurrence
RC Coombes, K Page, R Salari, RK Hastings, A Armstrong, S Ahmed, ...
Clinical Cancer Research 25 (14), 4255-4263, 2019
3872019
Mutations in early follicular lymphoma progenitors are associated with suppressed antigen presentation
MR Green, S Kihira, CL Liu, RV Nair, R Salari, AJ Gentles, J Irish, H Stehr, ...
Proceedings of the National Academy of Sciences 112 (10), E1116-E1125, 2015
3672015
Circulating tumor DNA in neoadjuvant-treated breast cancer reflects response and survival
MJM Magbanua, LB Swigart, HT Wu, GL Hirst, C Yau, DM Wolf, A Tin, ...
Annals of Oncology 32 (2), 229-239, 2021
2862021
Detection of ubiquitous and heterogeneous mutations in cell-free DNA from patients with early-stage non-small-cell lung cancer
M Jamal-Hanjani, GA Wilson, S Horswell, R Mitter, O Sakarya, ...
Annals of Oncology 27 (5), 862-867, 2016
2512016
Fast and scalable inference of multi-sample cancer lineages
V Popic, R Salari, I Hajirasouliha, D Kashef-Haghighi, RB West, ...
Genome biology 16, 1-17, 2015
2312015
A partition function algorithm for interacting nucleic acid strands
H Chitsaz, R Salari, SC Sahinalp, R Backofen
Bioinformatics 25 (12), i365-i373, 2009
1312009
Genome evolution during progression to breast cancer
DE Newburger, D Kashef-Haghighi, Z Weng, R Salari, RT Sweeney, ...
Genome research 23 (7), 1097-1108, 2013
1182013
Sensitive measurement of single-nucleotide polymorphism-induced changes of RNA conformation: application to disease studies
R Salari, C Kimchi-Sarfaty, MM Gottesman, TM Przytycka
Nucleic acids research 41 (1), 44-53, 2013
952013
Characterization of Coding Synonymous and Non-Synonymous Variants in ADAMTS13 Using Ex Vivo and In Silico Approaches
NC Edwards, ZA Hing, A Perry, A Blaisdell, DB Kopelman, R Fathke, ...
Plos one 7 (6), e38864, 2012
812012
Methods and compositions for determining ploidy
HE Kirkizlar, R Salari, S Sigurjonsson, B Zimmermann, A Ryan, ...
US Patent 11,479,812, 2022
742022
Inferring cancer subnetwork markers using density-constrained biclustering
P Dao, R Colak, R Salari, F Moser, E Davicioni, A Schönhuth, M Ester
Bioinformatics 26 (18), i625-i631, 2010
742010
Personalized serial circulating tumor DNA (ctDNA) analysis in high-risk early stage breast cancer patients to monitor and predict response to neoadjuvant therapy and outcome in …
M Magbanua, L Brown-Swigart, G Hirst, C Yau, D Wolf, A Ma, E Bergin, ...
Data presented at spotlight session: San Antonio Breast Cancer Symposium, 2018
692018
Early detection of residual breast cancer through a robust, scalable and personalized analysis of circulating tumour DNA (ctDNA) antedates overt metastatic recurrence
RC Coombes, A Armstrong, S Ahmed, K Page, RK Hastings, R Salari, ...
Cancer Res 79, P4-01, 2019
602019
Fast prediction of RNA-RNA interaction
R Salari, R Backofen, SC Sahinalp
Algorithms for molecular Biology 5, 1-10, 2010
602010
Methods for lung cancer detection
B Zimmermann, TP Constantin, R Salari, HE Kirkizlar, RC Swanton, ...
US Patent App. 16/092,436, 2019
552019
Compositions and methods for detection of nucleic acid mutations
B Zimmermann, J Babiarz, R Salari, TP Constantin, O Sakarya, D Prosen, ...
US Patent App. 16/309,271, 2019
532019
Time and space efficient RNA-RNA interaction prediction via sparse folding
R Salari, M Möhl, S Will, SC Sahinalp, R Backofen
Research in Computational Molecular Biology: 14th Annual International …, 2010
472010
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