Xiaojing Wang
Xiaojing Wang
UT Health San Antonio
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Cited by
Cited by
Proteogenomic characterization of human colon and rectal cancer
B Zhang, J Wang, X Wang, J Zhu, Q Liu, Z Shi, MC Chambers, ...
Nature 513 (7518), 382, 2014
Proteogenomic analysis of human colon cancer reveals new therapeutic opportunities
S Vasaikar, C Huang, X Wang, VA Petyuk, SR Savage, B Wen, Y Dou, ...
Cell 177 (4), 1035-1049. e19, 2019
Genome sequencing and comparative analysis of Saccharomyces cerevisiae strain YJM789
W Wei, JH McCusker, RW Hyman, T Jones, Y Ning, Z Cao, Z Gu, D Bruno, ...
Proceedings of the National Academy of Sciences 104 (31), 12825-12830, 2007
Protein identification using customized protein sequence databases derived from RNA-Seq data
X Wang, RJC Slebos, D Wang, PJ Halvey, DL Tabb, DC Liebler, B Zhang
Journal of proteome research 11 (2), 1009-1017, 2012
SEPPA: a computational server for spatial epitope prediction of protein antigens
J Sun, D Wu, T Xu, X Wang, X Xu, L Tao, YX Li, ZW Cao
Nucleic acids research 37 (suppl_2), W612-W616, 2009
customProDB: an R package to generate customized protein databases from RNA-Seq data for proteomics search
X Wang, B Zhang
Bioinformatics 29 (24), 3235-3237, 2013
Methods, tools and current perspectives in proteogenomics
KV Ruggles, K Krug, X Wang, KR Clauser, J Wang, SH Payne, D Fenyö, ...
Molecular & Cellular Proteomics 16 (6), 959-981, 2017
Oncogenic KRAS and BRAF drive metabolic reprogramming in colorectal cancer
JE Hutton, X Wang, LJ Zimmerman, RJC Slebos, IA Trenary, JD Young, ...
Molecular & Cellular Proteomics 15 (9), 2924-2938, 2016
Nuclear Factor of Activated T-cell Activity Is Associated with Metastatic Capacity in Colon Cancer
MK Tripathi, NG Deane, J Zhu, H An, S Mima, X Wang, S Padmanabhan, ...
Cancer research 74 (23), 6947-6957, 2014
Detection of proteome diversity resulted from alternative splicing is limited by trypsin cleavage specificity
X Wang, SG Codreanu, B Wen, K Li, MC Chambers, DC Liebler, B Zhang
Molecular & Cellular Proteomics 17 (3), 422-430, 2018
Leveraging the complementary nature of RNA‐Seq and shotgun proteomics data
X Wang, Q Liu, B Zhang
Proteomics 14 (23-24), 2676-2687, 2014
PepQuery enables fast, accurate, and convenient proteomic validation of novel genomic alterations
B Wen, X Wang, B Zhang
Genome research 29 (3), 485-493, 2019
Colorectal cancer cell line proteomes are representative of primary tumors and predict drug sensitivity
J Wang, D Mouradov, X Wang, RN Jorissen, MC Chambers, ...
Gastroenterology 153 (4), 1082-1095, 2017
Activation of the endogenous renin-angiotensin-aldosterone system or aldosterone administration increases urinary exosomal sodium channel excretion
Y Qi, X Wang, KL Rose, WH MacDonald, B Zhang, KL Schey, JM Luther
Journal of the American Society of Nephrology 27 (2), 646-656, 2016
PGA: an R/Bioconductor package for identification of novel peptides using a customized database derived from RNA-Seq
B Wen, S Xu, R Zhou, B Zhang, X Wang, X Liu, X Xu, S Liu
BMC bioinformatics 17, 1-6, 2016
Proteogenomic analysis reveals unanticipated adaptations of colorectal tumor cells to deficiencies in DNA mismatch repair
PJ Halvey, X Wang, J Wang, AA Bhat, P Dhawan, M Li, B Zhang, ...
Cancer research 74 (1), 387-397, 2014
Revealing Missing Human Protein Isoforms Based on Ab Initio Prediction, RNA-seq and Proteomics
Z Hu, HS Scott, G Qin, G Zheng, X Chu, L Xie, DL Adelson, BE Oftedal, ...
Scientific reports 5 (1), 10940, 2015
Conserved genes in a path from commensalism to pathogenicity: comparative phylogenetic profiles of Staphylococcus epidermidis RP62A and ATCC12228
W Wei, ZW Cao, YL Zhu, XJ Wang, GH Ding, H Xu, PL Jia, D Qu, ...
Bmc Genomics 7, 1-12, 2006
CanProVar 2.0: an updated database of human cancer proteome variation
M Zhang, B Wang, J Xu, X Wang, L Xie, B Zhang, Y Li, J Li
Journal of proteome research 16 (2), 421-432, 2017
Integrated analysis of telomerase enzymatic activity unravels an association with cancer stemness and proliferation
N Noureen, S Wu, Y Lv, J Yang, WK Alfred Yung, J Gelfond, X Wang, ...
Nature communications 12 (1), 139, 2021
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