Integrative analysis of 111 reference human epigenomes A Kundaje, W Meuleman, J Ernst, M Bilenky, A Yen, A Heravi-Moussavi, ... Nature 518 (7539), 317-330, 2015 | 6251 | 2015 |
Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation G Li, X Ruan, RK Auerbach, KS Sandhu, M Zheng, P Wang, HM Poh, ... Cell 148 (1), 84-98, 2012 | 1365 | 2012 |
Evaluation of methods for modeling transcription factor sequence specificity MT Weirauch, A Cote, R Norel, M Annala, Y Zhao, TR Riley, ... Nature biotechnology 31 (2), 126-134, 2013 | 410 | 2013 |
Telomerase directly regulates NF-κB-dependent transcription A Ghosh, G Saginc, SC Leow, E Khattar, EM Shin, TD Yan, M Wong, ... Nature cell biology 14 (12), 1270-1281, 2012 | 405 | 2012 |
3D chromosome modeling with semi-definite programming and Hi-C data ZZ Zhang, G Li, KC Toh, WK Sung Journal of computational biology 20 (11), 831-846, 2013 | 148 | 2013 |
Allele-specific epigenome maps reveal sequence-dependent stochastic switching at regulatory loci V Onuchic, E Lurie, I Carrero, P Pawliczek, RY Patel, J Rozowsky, ... Science 361 (6409), eaar3146, 2018 | 100 | 2018 |
Systems and methods for crowdsourcing, analyzing, and/or matching personal data Z Zhang, M Kellis, D Liu, A Kim, L Huang, S Nuckchady US Patent 11,593,512, 2023 | 91 | 2023 |
High-throughput 5′ UTR engineering for enhanced protein production in non-viral gene therapies J Cao, EM Novoa, Z Zhang, WCW Chen, D Liu, GCG Choi, ASL Wong, ... Nature communications 12 (1), 4138, 2021 | 91 | 2021 |
CENTDIST: discovery of co-associated factors by motif distribution Z Zhang, CW Chang, WL Goh, WK Sung, E Cheung Nucleic acids research 39 (suppl_2), W391-W399, 2011 | 68 | 2011 |
A high-throughput screening and computation platform for identifying synthetic promoters with enhanced cell-state specificity (SPECS) YTTKL Ming-Ru Wu, Lior Nissim, Doron Stupp, Erez Pery, Adina Binder-Nissim ... Nature Communications 10, 2019 | 65 | 2019 |
Real-time dynamic single-molecule protein sequencing on an integrated semiconductor device BD Reed, MJ Meyer, V Abramzon, O Ad, O Ad, P Adcock, FR Ahmad, ... Science 378 (6616), 186-192, 2022 | 63 | 2022 |
The Brm-HDAC3-Erm repressor complex suppresses dedifferentiation in Drosophila type II neuroblast lineages CT Koe, S Li, F Rossi, JJL Wong, Y Wang, Z Zhang, K Chen, SS Aw, ... Elife 3, e01906, 2014 | 59 | 2014 |
Inference of spatial organizations of chromosomes using semi-definite embedding approach and Hi-C data ZZ Zhang, G Li, KC Toh, WK Sung Research in Computational Molecular Biology: 17th Annual International …, 2013 | 54 | 2013 |
An AR-ERG transcriptional signature defined by long-range chromatin interactomes in prostate cancer cells Z Zhang, KR Chng, S Lingadahalli, Z Chen, MH Liu, HH Do, S Cai, ... Genome research 29 (2), 223-235, 2019 | 47 | 2019 |
Genie: a secure, transparent sharing and services platform for genetic and health data S Zhang, A Kim, D Liu, SC Nuckchady, L Huang, A Masurkar, J Zhang, ... arXiv preprint arXiv:1811.01431, 2018 | 21 | 2018 |
Integrative Analysis of CRISPR/Cas9 Target Sites in the Human HBB Gene Y Luo, D Zhu, Z Zhang, Y Chen, X Sun BioMed Research International 2015 (1), 514709, 2015 | 21 | 2015 |
Simultaneously learning DNA motif along with its position and sequence rank preferences through expectation maximization algorithm ZZ Zhang, CW Chang, W Hugo, E Cheung, WK Sung Journal of Computational Biology 20 (3), 237-248, 2013 | 13 | 2013 |
Multitissue H3K27ac profiling of GTEx samples links epigenomic variation to disease L Hou, X Xiong, Y Park, C Boix, B James, N Sun, L He, A Patel, Z Zhang, ... Nature Genetics 55 (10), 1665-1676, 2023 | 9 | 2023 |
A New Nearest Neighbour Searching Algorithm Based on M2M Model. YP Zhang, ZZ Zhang, Q Chen IMECS, 31-37, 2007 | 9 | 2007 |
Ranking potential customers based on group-ensemble ZZ Zhang, Q Chen, SF Ke, YJ Wu, F Qi, YP Zhang International Journal of Data Warehousing and Mining (IJDWM) 4 (2), 79-89, 2008 | 8 | 2008 |