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Zhizhuo Zhang
Zhizhuo Zhang
Postdoctoral Research Associate, MIT
Verified email at mit.edu - Homepage
Title
Cited by
Cited by
Year
Integrative analysis of 111 reference human epigenomes
A Kundaje, W Meuleman, J Ernst, M Bilenky, A Yen, A Heravi-Moussavi, ...
Nature 518 (7539), 317-330, 2015
62512015
Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation
G Li, X Ruan, RK Auerbach, KS Sandhu, M Zheng, P Wang, HM Poh, ...
Cell 148 (1), 84-98, 2012
13652012
Evaluation of methods for modeling transcription factor sequence specificity
MT Weirauch, A Cote, R Norel, M Annala, Y Zhao, TR Riley, ...
Nature biotechnology 31 (2), 126-134, 2013
4102013
Telomerase directly regulates NF-κB-dependent transcription
A Ghosh, G Saginc, SC Leow, E Khattar, EM Shin, TD Yan, M Wong, ...
Nature cell biology 14 (12), 1270-1281, 2012
4052012
3D chromosome modeling with semi-definite programming and Hi-C data
ZZ Zhang, G Li, KC Toh, WK Sung
Journal of computational biology 20 (11), 831-846, 2013
1482013
Allele-specific epigenome maps reveal sequence-dependent stochastic switching at regulatory loci
V Onuchic, E Lurie, I Carrero, P Pawliczek, RY Patel, J Rozowsky, ...
Science 361 (6409), eaar3146, 2018
1002018
Systems and methods for crowdsourcing, analyzing, and/or matching personal data
Z Zhang, M Kellis, D Liu, A Kim, L Huang, S Nuckchady
US Patent 11,593,512, 2023
912023
High-throughput 5′ UTR engineering for enhanced protein production in non-viral gene therapies
J Cao, EM Novoa, Z Zhang, WCW Chen, D Liu, GCG Choi, ASL Wong, ...
Nature communications 12 (1), 4138, 2021
912021
CENTDIST: discovery of co-associated factors by motif distribution
Z Zhang, CW Chang, WL Goh, WK Sung, E Cheung
Nucleic acids research 39 (suppl_2), W391-W399, 2011
682011
A high-throughput screening and computation platform for identifying synthetic promoters with enhanced cell-state specificity (SPECS)
YTTKL Ming-Ru Wu, Lior Nissim, Doron Stupp, Erez Pery, Adina Binder-Nissim ...
Nature Communications 10, 2019
652019
Real-time dynamic single-molecule protein sequencing on an integrated semiconductor device
BD Reed, MJ Meyer, V Abramzon, O Ad, O Ad, P Adcock, FR Ahmad, ...
Science 378 (6616), 186-192, 2022
632022
The Brm-HDAC3-Erm repressor complex suppresses dedifferentiation in Drosophila type II neuroblast lineages
CT Koe, S Li, F Rossi, JJL Wong, Y Wang, Z Zhang, K Chen, SS Aw, ...
Elife 3, e01906, 2014
592014
Inference of spatial organizations of chromosomes using semi-definite embedding approach and Hi-C data
ZZ Zhang, G Li, KC Toh, WK Sung
Research in Computational Molecular Biology: 17th Annual International …, 2013
542013
An AR-ERG transcriptional signature defined by long-range chromatin interactomes in prostate cancer cells
Z Zhang, KR Chng, S Lingadahalli, Z Chen, MH Liu, HH Do, S Cai, ...
Genome research 29 (2), 223-235, 2019
472019
Genie: a secure, transparent sharing and services platform for genetic and health data
S Zhang, A Kim, D Liu, SC Nuckchady, L Huang, A Masurkar, J Zhang, ...
arXiv preprint arXiv:1811.01431, 2018
212018
Integrative Analysis of CRISPR/Cas9 Target Sites in the Human HBB Gene
Y Luo, D Zhu, Z Zhang, Y Chen, X Sun
BioMed Research International 2015 (1), 514709, 2015
212015
Simultaneously learning DNA motif along with its position and sequence rank preferences through expectation maximization algorithm
ZZ Zhang, CW Chang, W Hugo, E Cheung, WK Sung
Journal of Computational Biology 20 (3), 237-248, 2013
132013
Multitissue H3K27ac profiling of GTEx samples links epigenomic variation to disease
L Hou, X Xiong, Y Park, C Boix, B James, N Sun, L He, A Patel, Z Zhang, ...
Nature Genetics 55 (10), 1665-1676, 2023
92023
A New Nearest Neighbour Searching Algorithm Based on M2M Model.
YP Zhang, ZZ Zhang, Q Chen
IMECS, 31-37, 2007
92007
Ranking potential customers based on group-ensemble
ZZ Zhang, Q Chen, SF Ke, YJ Wu, F Qi, YP Zhang
International Journal of Data Warehousing and Mining (IJDWM) 4 (2), 79-89, 2008
82008
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Articles 1–20