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Vasimuddin Md
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Efficient architecture-aware acceleration of BWA-MEM for multicore systems
M Vasimuddin, S Misra, H Li, S Aluru
2019 IEEE international parallel and distributed processing symposium (IPDPS …, 2019
10542019
Distgnn: Scalable distributed training for large-scale graph neural networks
V Md, S Misra, G Ma, R Mohanty, E Georganas, A Heinecke, D Kalamkar, ...
Proceedings of the International Conference for High Performance Computing …, 2021
1052021
Accelerating minimap2 for long-read sequencing applications on modern CPUs
S Kalikar, C Jain, M Vasimuddin, S Misra
Nature Computational Science 2 (2), 78-83, 2022
46*2022
Tensor processing primitives: A programming abstraction for efficiency and portability in deep learning workloads
E Georganas, D Kalamkar, S Avancha, M Adelman, C Anderson, A Breuer, ...
Proceedings of the International Conference for High Performance Computing …, 2021
212021
Parallel bayesian network structure learning for genome-scale gene networks
S Misra, M Vasimuddin, K Pamnany, SP Chockalingam, Y Dong, M Xie, ...
SC'14: Proceedings of the International Conference for High Performance …, 2014
192014
LISA: towards learned DNA sequence search
D Ho, J Ding, S Misra, N Tatbul, V Nathan, V Md, T Kraska
arXiv preprint arXiv:1910.04728, 2019
142019
Genomicsbench: A benchmark suite for genomics
A Subramaniyan, Y Gu, T Dunn, S Paul, M Vasimuddin, S Misra, ...
2021 IEEE International Symposium on Performance Analysis of Systems and …, 2021
132021
Performance extraction and suitability analysis of multi-and many-core architectures for next generation sequencing secondary analysis
S Misra, TC Pan, K Mahadik, G Powley, PN Vaidya, M Vasimuddin, ...
Proceedings of the 27th International Conference on Parallel Architectures …, 2018
122018
Identification of significant computational building blocks through comprehensive investigation of NGS secondary analysis methods
M Vasimuddin, S Misra, S Aluru
Preprint] bioRXiv, April, 2018
92018
A parallel algorithm for Bayesian network inference using arithmetic circuits
M Vasimuddin, SP Chockalingam, S Aluru
2018 IEEE International Parallel and Distributed Processing Symposium (IPDPS …, 2018
72018
Parallel exact dynamic bayesian network structure learning with application to gene networks
M Vasimuddin, S Aluru
2017 IEEE 24th International Conference on High Performance Computing (HiPC …, 2017
62017
Dtree: Dynamic task scheduling at petascale
K Pamnany, S Misra, V Md, X Liu, E Chow, S Aluru
High Performance Computing: 30th International Conference, ISC High …, 2015
62015
Lisa: learned indexes for sequence analysis
D Ho, S Kalikar, S Misra, J Ding, V Md, N Tatbul, H Li, T Kraska
bioRxiv, 2020-2012, 2021
42021
Deep graph library optimizations for intel (r) x86 architecture
S Avancha, V Md, S Misra, R Mohanty
arXiv preprint arXiv:2007.06354, 2020
42020
GenDP: A Framework of Dynamic Programming Acceleration for Genome Sequencing Analysis
Y Gu, A Subramaniyan, T Dunn, A Khadem, KY Chen, S Paul, ...
Proceedings of the 50th Annual International Symposium on Computer …, 2023
22023
Lisa: Learned indexes for DNA sequence analysis
D Ho, S Kalikar, S Misra, J Ding, V Md, N Tatbul, H Li, T Kraska
bioRxiv, 2020
22020
DistGNN-MB: Distributed Large-Scale Graph Neural Network Training on x86 via Minibatch Sampling
M Vasimuddin, R Mohanty, S Misra, S Avancha
arXiv preprint arXiv:2211.06385, 2022
12022
Identification of significant computational building blocks through comprehensive deep dive of ngs secondary analysis methods
M Vasimuddin, S Misra, S Aluru
bioRxiv, 301903, 2018
12018
Tensor Processing Primitives: A Programming Abstraction for Efficiency and Portability in Deep Learning and HPC Workloads
E Georganas, D Kalamkar, S Avancha, M Adelman, D Aggarwal, ...
Frontiers in Applied Mathematics and Statistics 8, 826269, 2022
2022
Parallel algorithms for large scale bayesian networks learning and inference
M Vasimuddin
Mumbai, 0
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Articles 1–20