Ngoc Hieu Tran
Ngoc Hieu Tran
David R. Cheriton School of Computer Science, University of Waterloo, Canada
Verified email at uwaterloo.ca
Title
Cited by
Cited by
Year
De novo peptide sequencing by deep learning
NH Tran, X Zhang, L Xin, B Shan, M Li
Proceedings of the National Academy of Sciences, 2017
1732017
Deep learning enables de novo peptide sequencing from data-independent-acquisition mass spectrometry
NH Tran, R Qiao, L Xin, X Chen, C Liu, X Zhang, B Shan, A Ghodsi, M Li
Nature methods 16 (1), 63-66, 2019
1192019
Complete De Novo Assembly of Monoclonal Antibody Sequences
NH Tran, MZ Rahman, L He, L Xin, B Shan, M Li
Scientific Reports, 2016
742016
Counting motifs in the human interactome
NH Tran, KP Choi, L Zhang
Nature communications, 2013
452013
DeepIso: A Deep Learning Model for Peptide Feature Detection from LC-MS map
FT Zohora, MZ Rahman, NH Tran, L Xin, B Shan, M Li
Scientific Reports 9 (1), 1-13, 2019
232019
Profiling the transcription factor regulatory networks of human cell types
S Zhang, D Tian, NH Tran, KP Choi, L Zhang
Nucleic acids research, 2014
222014
Comparison of next-generation sequencing samples using compression-based distances and its application to phylogenetic reconstruction
NH Tran, X Chen
BMC research notes, 2014
132014
Personalized deep learning of individual immunopeptidomes to identify neoantigens for cancer vaccines
NH Tran, R Qiao, L Xin, X Chen, B Shan, M Li
Nature Machine Intelligence 2 (12), 764-771, 2020
12*2020
Computationally instrument-resolution-independent de novo peptide sequencing for high-resolution devices
R Qiao, NH Tran, L Xin, X Chen, M Li, B Shan, A Ghodsi
Nature Machine Intelligence, 1-6, 2021
11*2021
AMAS: optimizing the partition and filtration of adaptive seeds to speed up read mapping
NH Tran, X Chen
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2015
7*2015
Deep Omics
NH Tran, X Zhang, M Li
Proteomics 18 (2), 1700319, 2018
62018
Protein identification with deep learning: from abc to xyz
NH Tran, Z Levine, L Xin, B Shan, M Li
arXiv preprint arXiv:1710.02765, 2017
52017
Methods and systems for de novo peptide sequencing using deep learning
B Shan, NH Tran, M Li, L Xin, X Zhang
US Patent App. 16/037,949, 2019
2*2019
Genetic profiling of Vietnamese population from large-scale genomic analysis of non-invasive prenatal testing data
NH Tran, TB Vo, NT Tran, THN Trinh, HAT Pham, THT Dao, NM Nguyen, ...
Scientific Reports 10 (1), 1-8, 2020
1*2020
SYSTEMS AND METHODS FOR DE NOVO PEPTIDE SEQUENCING USING DEEP LEARNING AND SPECTRUM PAIRS
R Qiao, NH Tran, L Xin, X Chen, B Shan, A Ghodsi, M LI
US Patent App. 16/846,817, 2020
2020
Systems and methods for patient-specific identification of neoantigens by de novo peptide sequencing for personalized immunotherapy
R Qiao, NH Tran, XIN Lei, X Chen, S Baozhen, M Li
US Patent App. 16/775,947, 2020
2020
Genetic landscape of recessive diseases in the Vietnamese population from large-scale clinical exome sequencing
NH Tran, THN Thi, HS Tang, LP Hoang, TH Le Nguyen, NT Tran, ...
bioRxiv, 2020
2020
Systems and methods for de novo peptide sequencing from data-independent acquisition using deep learning
S Baozhen, NH Tran, M Li, XIN Lei, R Qiao, X Chen, C Liu
US Patent App. 16/226,575, 2019
2019
Methods and systems for assembly of protein sequences
NH Tran, MZ Rahman, L He, L Xin, B Shan, M Li
US Patent App. 15/599,431, 2017
2017
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