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Thomas Keane
Thomas Keane
Research and Service Group Leader
Verified email at ebi.ac.uk - Homepage
Title
Cited by
Cited by
Year
A map of human genome variation from population scale sequencing
1000 Genomes Project Consortium
Nature 467 (7319), 1061, 2010
88012010
An integrated map of genetic variation from 1,092 human genomes
1000 Genomes Project Consortium
Nature 491 (7422), 56, 2012
82932012
Twelve years of SAMtools and BCFtools
P Danecek, JK Bonfield, J Liddle, J Marshall, V Ohan, MO Pollard, ...
Gigascience 10 (2), giab008, 2021
54992021
Mouse genomic variation and its effect on phenotypes and gene regulation
TM Keane, L Goodstadt, P Danecek, MA White, K Wong, B Yalcin, ...
Nature 477 (7364), 289-294, 2011
16252011
Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified
TM Keane, CJ Creevey, MM Pentony, TJ Naughton, JO Mclnerney
BMC evolutionary biology 6, 1-17, 2006
12152006
Demographic history and rare allele sharing among human populations
S Gravel, BM Henn, RN Gutenkunst, AR Indap, GT Marth, AG Clark, F Yu, ...
Proceedings of the National Academy of Sciences 108 (29), 11983-11988, 2011
7092011
ABACAS: algorithm-based automatic contiguation of assembled sequences
S Assefa, TM Keane, TD Otto, C Newbold, M Berriman
Bioinformatics 25 (15), 1968-1969, 2009
5262009
A comparative phenotypic and genomic analysis of C57BL/6J and C57BL/6N mouse strains
MM Simon, S Greenaway, JK White, H Fuchs, V Gailus-Durner, S Wells, ...
Genome biology 14, 1-22, 2013
5232013
Twelve years of SAMtools and BCFtools. Gigascience 10: giab008
P Danecek, JK Bonfield, J Liddle, J Marshall, V Ohan, MO Pollard, ...
4922021
The genome of the simian and human malaria parasite Plasmodium knowlesi
A Pain, U Böhme, AE Berry, K Mungall, RD Finn, AP Jackson, T Mourier, ...
Nature 455 (7214), 799-803, 2008
4862008
Assessing the gene space in draft genomes
G Parra, K Bradnam, Z Ning, T Keane, I Korf
Nucleic acids research 37 (1), 289-297, 2009
4822009
New insights into the blood‐stage transcriptome of Plasmodium falciparum using RNA‐Seq
TD Otto, D Wilinski, S Assefa, TM Keane, LR Sarry, U Böhme, J Lemieux, ...
Molecular microbiology 76 (1), 12-24, 2010
4522010
Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel
O Delaneau, J Marchini
Nature communications 5 (1), 3934, 2014
4392014
POT1 loss-of-function variants predispose to familial melanoma
CD Robles-Espinoza, M Harland, AJ Ramsay, LG Aoude, V Quesada, ...
Nature genetics 46 (5), 478-481, 2014
4262014
Improved imputation of low-frequency and rare variants using the UK10K haplotype reference panel
J Huang, B Howie, S McCarthy, Y Memari, K Walter, JL Min, P Danecek, ...
Nature communications 6 (1), 8111, 2015
4082015
The mutational landscapes of genetic and chemical models of Kras-driven lung cancer
PMK Westcott, KD Halliwill, MD To, M Rashid, AG Rust, TM Keane, ...
Nature 517 (7535), 489-492, 2015
3552015
Sequence-based characterization of structural variation in the mouse genome
B Yalcin, K Wong, A Agam, M Goodson, TM Keane, X Gan, C Nellåker, ...
Nature 477 (7364), 326-329, 2011
3362011
The BRAF pseudogene functions as a competitive endogenous RNA and induces lymphoma in vivo
FA Karreth, M Reschke, A Ruocco, C Ng, B Chapuy, V Léopold, ...
Cell 161 (2), 319-332, 2015
3342015
Off-target mutations are rare in Cas9-modified mice
V Iyer, B Shen, W Zhang, A Hodgkins, T Keane, X Huang, WC Skarnes
Nature methods 12 (6), 479-479, 2015
2162015
RetroSeq: transposable element discovery from next-generation sequencing data
TM Keane, K Wong, DJ Adams
Bioinformatics 29 (3), 389-390, 2013
2122013
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