Andre J. Aberer

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Alexandros StamatakisFoundation for Research and Technology - Hellas, HITS gGmbH, KITVerified email at ics.forth.gr
Fernando Izquierdo-CarrascoAmazon Web ServicesVerified email at amazon.com
Karen MeusemannLeibniz Institute for the Analysis of Biodiversity Change (LIB), Museum Koenig (ZFMK)Verified email at karen-meusemann.de
Oleksiy M. KozlovHeidelberg Institute for Theoretical StudiesVerified email at h-its.org
Diego DarribaUniversity of A Coruña, CITIC, Computer Architecture GroupVerified email at udc.es
Simon A BergerHeidelberg Institute for Theoretical Studies (HITS gGmbH)Verified email at h-its.org
Nicholas D. PattengaleVerified email at cs.unm.edu
Frank FriedrichHead of Electron Microscopy Section, Institute of Zoology, Hamburg UniversityVerified email at uni-hamburg.de
Karl KjerUpworkVerified email at ucdavis.edu
Christoph MayerZoologisches Forschungsmuseum Alexander KoenigVerified email at uni-bonn.de
Stephen A. SmithProfessor, University of MichiganVerified email at umich.edu
Ingo EbersbergerProfessor for Applied Bioinformatics, Goethe University FrankfurtVerified email at bio.uni-frankfurt.de
Bui Quang Minh (Minh Bùi)Associate Professor, Australian National UniversityVerified email at anu.edu.au
Susanne S. RennerWashington University - Saint LouisVerified email at lmu.de
Mathieu PiednoëlPost-doctoral fellow, Genome Plasticity and Computational Genetics, Max Planck Institute for PlantVerified email at mpipz.mpg.de
Jiri MacasPrincipal investigator at Biology Centre ASCR, Ceske Budejovice, Czech RepublicVerified email at umbr.cas.cz
Petr NovakResearch ScientistVerified email at umbr.cas.cz
Gerald M. SchneeweissDepartment of Botany and Biodiversity Research, University of ViennaVerified email at univie.ac.at
Bernard M.E. MoretISCB Fellow, Professor emeritus, Computer & Communication Sciences, EPFLVerified email at epfl.ch
Krister M. SwensonCNRS, LIRMM, Université MontpellierVerified email at lirmm.fr

Andre J. Aberer

Unknown affiliation

Verified email at aberer.io - Homepage

algorithms high performance computing bioinformatics phylogenetic inference population genetics


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Phylogenomics resolves the timing and pattern of insect evolution B Misof, S Liu, K Meusemann, RS Peters, A Donath, C Mayer, ... Science 346 (6210), 763-767, 2014	2634	2014
Whole-genome analyses resolve early branches in the tree of life of modern birds ED Jarvis, S Mirarab, AJ Aberer, B Li, P Houde, C Li, SYW Ho, ... Science 346 (6215), 1320-1331, 2014	2005	2014
ExaBayes: massively parallel Bayesian tree inference for the whole-genome era AJ Aberer, K Kobert, A Stamatakis Molecular biology and evolution 31 (10), 2553-2556, 2014	449	2014
Pruning rogue taxa improves phylogenetic accuracy: an efficient algorithm and webservice AJ Aberer, D Krompass, A Stamatakis Systematic biology 62 (1), 162-166, 2013	419	2013
ExaML version 3: a tool for phylogenomic analyses on supercomputers AM Kozlov, AJ Aberer, A Stamatakis Bioinformatics 31 (15), 2577-2579, 2015	246	2015
The evolutionary history of holometabolous insects inferred from transcriptome-based phylogeny and comprehensive morphological data RS Peters, K Meusemann, M Petersen, C Mayer, J Wilbrandt, T Ziesmann, ... BMC evolutionary biology 14, 1-16, 2014	190	2014
The phylogenetic likelihood library T Flouri, F Izquierdo-Carrasco, D Darriba, AJ Aberer, LT Nguyen, BQ Minh, ... Systematic biology 64 (2), 356-362, 2015	171	2015
RAxML-Light: a tool for computing terabyte phylogenies A Stamatakis, AJ Aberer, C Goll, SA Smith, SA Berger, ... Bioinformatics 28 (15), 2064-2066, 2012	166	2012
Decisive data sets in phylogenomics: lessons from studies on the phylogenetic relationships of primarily wingless insects E Dell’Ampio, K Meusemann, NU Szucsich, RS Peters, B Meyer, J Borner, ... Molecular biology and evolution 31 (1), 239-249, 2014	136	2014
Next-generation sequencing reveals the impact of repetitive DNA across phylogenetically closely related genomes of Orobanchaceae M Piednoël, AJ Aberer, GM Schneeweiss, J Macas, P Novak, H Gundlach, ... Molecular Biology and Evolution 29 (11), 3601-3611, 2012	83	2012
Novel parallelization schemes for large-scale likelihood-based phylogenetic inference A Stamatakis, AJ Aberer 2013 IEEE 27th International Symposium on Parallel and Distributed …, 2013	59	2013
Uncovering hidden phylogenetic consensus in large data sets N Pattengale, A Aberer, K Swenson, A Stamatakis, B Moret IEEE/ACM transactions on computational biology and bioinformatics 8 (4), 902-911, 2011	51	2011
A Simple and Accurate Method for Rogue Taxon Identification AJ Aberer, A Stamatakis	51	2011
The divisible load balance problem and its application to phylogenetic inference K Kobert, T Flouri, A Aberer, A Stamatakis Algorithms in Bioinformatics: 14th International Workshop, WABI 2014 …, 2014	27	2014
Boosting the performance of bayesian divergence time estimation with the phylogenetic likelihood library D Darriba, A Aberer, T Flouri, TA Heath, F Izquierdo-Carrasco, ... 2013 IEEE International Symposium on Parallel & Distributed Processing …, 2013	19	2013
Rapid forward-in-time simulation at the chromosome and genome level AJ Aberer, A Stamatakis BMC bioinformatics 14, 1-13, 2013	18	2013
An efficient independence sampler for updating branches in Bayesian Markov chain Monte Carlo sampling of phylogenetic trees AJ Aberer, A Stamatakis, F Ronquist Systematic biology 65 (1), 161-176, 2016	17	2016
Parallelized phylogenetic post-analysis on multi-core architectures AJ Aberer, ND Pattengale, A Stamatakis Journal of Computational Science 1 (2), 107-114, 2010	15	2010
Parallel computation of phylogenetic consensus trees AJ Aberer, ND Pattengale, A Stamatakis Procedia Computer Science 1 (1), 1065-1073, 2010	11	2010
Advanced Methods for Phylogenetic Post-Analysis AJ Aberer TUM/LMU, 2011	4	2011

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