William S. Hlavacek

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James R FaederUniversity of PittsburghVerified email at pitt.edu
Michael L BlinovAssociate ProfessorVerified email at uchc.edu
Richard G. PosnerProfessor Northern Arizona UniversityVerified email at nau.edu
Byron GoldsteinLaboratory Fellow, Theoretical Biology and Biophysics Group, Los Alamos National LaboratoryVerified email at lanl.gov
Michael E. WallResearch Scientist, Los Alamos National LaboratoryVerified email at lanl.gov
Lily A. ChylekPostdoctoral Researcher, Harvard Medical SchoolVerified email at hms.harvard.edu
Bridget S. WilsonUniversity of New Mexico Verified email at salud.unm.edu
Alan S PerelsonSenior Fellow, Los Alamos National LaboratoryVerified email at lanl.gov
Jin YangCAS-MPG Partner Institute for Computational Biology, Shanghai, ChinaVerified email at alumni.rice.edu
Michael A. SavageauDistinguished Professor, UC DavisVerified email at ucdavis.edu
Tomasz LipniackiInstitute of Fundamental Technological ResearchVerified email at ippt.gov.pl
Ilya NemenmanEmory University, Physics and BiologyVerified email at emory.edu
Daniel Von HoffChief Scientific Officer US Oncology, Chief Scientific Officer TGen, Distinguished Professor MayoVerified email at tgen.org
Ryan SudermanImmunetrics, Inc.Verified email at immunetrics.com
Joshua ColvinVerified email at nau.edu
Clifford UnkeferSpinCeuticaVerified email at spinceutica.com
Katie MartinScientific Project Leader, Van Andel InstituteVerified email at vai.org
Keith A. LidkeUniversity of New MexicoVerified email at unm.edu
Michael HuckaCalifornia Institute of TechnologyVerified email at caltech.edu
Andrew H.A. ClaytonProfessor of Biophotonics, Swinburne University of TechnologyVerified email at swin.edu.au

William S. Hlavacek

Theoretical Division, Los Alamos National Laboratory

Verified email at lanl.gov - Homepage

systems biology quantitative biology


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Rule-based modeling of biochemical systems with BioNetGen JR Faeder, ML Blinov, WS Hlavacek Methods Mol Biol 500, 113-167, 2009	458	2009
BioNetGen: software for rule-based modeling of signal transduction based on the interactions of molecular domains ML Blinov, JR Faeder, B Goldstein, WS Hlavacek Bioinformatics 20 (17), 3289-3291, 2004	438	2004
Rules for modeling signal-transduction systems WS Hlavacek, JR Faeder, ML Blinov, RG Posner, M Hucka, W Fontana Science's STKE 2006 (344), re6-re6, 2006	414	2006
Design of gene circuits: lessons from bacteria ME Wall, WS Hlavacek, MA Savageau Nature Reviews Genetics 5 (1), 34-42, 2004	252	2004
Mathematical and computational models of immune-receptor signalling B Goldstein, JR Faeder, WS Hlavacek Nature Reviews Immunology 4 (6), 445-456, 2004	234	2004
The complexity of complexes in signal transduction WS Hlavacek, JR Faeder, ML Blinov, AS Perelson, B Goldstein Biotechnology and bioengineering 84 (7), 783-794, 2003	232	2003
Investigation of early events in FcεRI-mediated signaling using a detailed mathematical model JR Faeder, WS Hlavacek, I Reischl, ML Blinov, H Metzger, A Redondo, ... The Journal of Immunology 170 (7), 3769-3781, 2003	188	2003
A network model of early events in epidermal growth factor receptor signaling that accounts for combinatorial complexity ML Blinov, JR Faeder, B Goldstein, WS Hlavacek Biosystems 83 (2-3), 136-151, 2006	185	2006
Rule‐based modeling of biochemical networks JR Faeder, ML Blinov, B Goldstein, WS Hlavacek Complexity 10 (4), 22-41, 2005	153	2005
Rules for coupled expression of regulator and effector genes in inducible circuits WS Hlavacek, MA Savageau Journal of molecular biology 255 (1), 121-139, 1996	141	1996
Kinetic Monte Carlo method for rule-based modeling of biochemical networks J Yang, MI Monine, JR Faeder, WS Hlavacek Physical Review E 78 (3), 031910, 2008	134	2008
Steric effects on multivalent ligand-receptor binding: exclusion of ligand sites by bound cell surface receptors WS Hlavacek, RG Posner, AS Perelson Biophysical Journal 76 (6), 3031-3043, 1999	121	1999
Rule‐based modeling: a computational approach for studying biomolecular site dynamics in cell signaling systems LA Chylek, LA Harris, CS Tung, JR Faeder, CF Lopez, WS Hlavacek Wiley Interdisciplinary Reviews: Systems Biology and Medicine 6 (1), 13-36, 2014	120	2014
Graph theory for rule-based modeling of biochemical networks ML Blinov, J Yang, JR Faeder, WS Hlavacek Lect Notes Comput Sci 4230, 89-106, 2006	94	2006
Influence of follicular dendritic cells on decay of HIV during antiretroviral therapy WS Hlavacek, NI Stilianakis, DW Notermans, SA Danner, AS Perelson Proceedings of the National Academy of Sciences 97 (20), 10966-10971, 2000	87	2000
Stochastic effects and bistability in T cell receptor signaling T Lipniacki, B Hat, JR Faeder, WS Hlavacek Journal of theoretical Biology 254 (1), 110-122, 2008	85	2008
Multiple functions of a feed-forward-loop gene circuit ME Wall, MJ Dunlop, WS Hlavacek Journal of molecular biology 349 (3), 501-514, 2005	84	2005
Dissociation of HIV-1 from follicular dendritic cells during HAART: mathematical analysis WS Hlavacek, C Wofsy, AS Perelson Proceedings of the National Academy of Sciences 96 (26), 14681-14686, 1999	80	1999
Mitochondrial morphological features are associated with fission and fusion events LM Westrate, JA Drocco, KR Martin, WS Hlavacek, JP MacKeigan PloS one 9 (4), e95265, 2014	72	2014
Combinatorial complexity and dynamical restriction of network flows in signal transduction JR Faeder, ML Blinov, B Goldstein, WS Hlavacek Systems Biology 2 (1), 5-15, 2005	72	2005

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