| Kraken: ultrafast metagenomic sequence classification using exact alignments DE Wood, SL Salzberg Genome Biology 15 (3), R46, 2014 | 4428 | 2014 |
| Improved metagenomic analysis with Kraken 2 DE Wood, J Lu, B Langmead Genome Biology 20 (1), 257, 2019 | 4210 | 2019 |
| Metagenome analysis using the Kraken software suite J Lu, N Rincon, DE Wood, FP Breitwieser, C Pockrandt, B Langmead, ... Nature Protocols, 1-25, 2022 | 261 | 2022 |
| Unexpected cross-species contamination in genome sequencing projects S Merchant, DE Wood, SL Salzberg PeerJ 2, e675, 2014 | 172 | 2014 |
| EDGE-pro: estimated degree of gene expression in prokaryotic genomes T Magoc, D Wood, SL Salzberg Evolutionary Bioinformatics 9, 127-136, 2013 | 152 | 2013 |
| A machine learning approach for somatic mutation discovery DE Wood, JR White, A Georgiadis, B Van Emburgh, S Parpart-Li, ... Science Translational Medicine 10 (457), eaar7939, 2018 | 109 | 2018 |
| Thousands of missed genes found in bacterial genomes and their analysis with COMBREX DE Wood, H Lin, A Levy-Moonshine, R Swaminathan, YC Chang, ... Biology Direct 7 (1), 37, 2012 | 41 | 2012 |
| Automated next-generation profiling of genomic alterations in human cancers LA Keefer, JR White, DE Wood, KMR Gerding, KC Valkenburg, D Riley, ... Nature Communications 13 (1), 1-15, 2022 | 12 | 2022 |
| Releasing the Kraken SL Salzberg, DE Wood Frontiers in Bioinformatics, 75, 2021 | 8 | 2021 |
| Machine Learning System and Method for Somatic Mutation Discovery SV Angiuoli, D Wood US Patent 11,972,841, 2024 | 4 | 2024 |
| Analytical validation of an integrated next-generation sequencing pan-cancer liquid biopsy approach for detection of microsatellite instability A Georgiadis, D Wood, D Murphy, S Parpart-Li, D Riley, N Sengamalay, ... Cancer Research 78 (13_Supplement), 1286-1286, 2018 | 4 | 2018 |
| Author Correction: Metagenome analysis using the Kraken software suite J Lu, N Rincon, DE Wood, FP Breitwieser, C Pockrandt, B Langmead, ... Nature protocols, 2024 | 1 | 2024 |
| Machine learning system and method for somatic mutation discovery SV Angiuoli, D Wood US Patent App. 18/619,485, 2024 | | 2024 |
| Microsatellite instability signatures D Wood US Patent App. 17/909,537, 2023 | | 2023 |
| Development and Analysis of a Machine Learning Variant Caller DE Wood, A Georgiadis, JR White, B Van Emburgh, S Parpart-Li, ... Journal of Molecular Diagnostics 20 (6), 962-962, 2018 | | 2018 |
Steven SalzbergBloomberg Distinguished Professor, Johns Hopkins UniversityVerified email at jhu.edu
