| Nucleosomes can form a polar barrier to transcript elongation by RNA polymerase II VA Bondarenko, LM Steele, A Újvári, DA Gaykalova, OI Kulaeva, ... Molecular cell 24 (3), 469-479, 2006 | 314 | 2006 |
| Activation of the NOTCH Pathway in Head and Neck Cancer W Sun, DA Gaykalova, MF Ochs, E Mambo, D Arnaoutakis, Y Liu, M Loyo, ... Cancer research 74 (4), 1091-1104, 2014 | 269 | 2014 |
| Using DNA mechanics to predict in vitro nucleosome positions and formation energies AV Morozov, K Fortney, DA Gaykalova, VM Studitsky, J Widom, ED Siggia Nucleic acids research 37 (14), 4707-4722, 2009 | 223 | 2009 |
| Mechanism of chromatin remodeling and recovery during passage of RNA polymerase II OI Kulaeva, DA Gaykalova, NA Pestov, VV Golovastov, DG Vassylyev, ... Nature structural & molecular biology 16 (12), 1272-1278, 2009 | 208 | 2009 |
| Transcription through chromatin by RNA polymerase II: histone displacement and exchange OI Kulaeva, DA Gaykalova, VM Studitsky Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis 618 (1 …, 2007 | 124 | 2007 |
| Epigenetic regulation of gene expression in cancer: techniques, resources and analysis LT Kagohara, GL Stein-O’Brien, D Kelley, E Flam, HC Wick, LV Danilova, ... Briefings in functional genomics 17 (1), 49-63, 2018 | 122 | 2018 |
| Novel insight into mutational landscape of head and neck squamous cell carcinoma DA Gaykalova, E Mambo, A Choudhary, J Houghton, K Buddavarapu, ... PloS one 9 (3), e93102, 2014 | 101 | 2014 |
| Structural analysis of nucleosomal barrier to transcription DA Gaykalova, OI Kulaeva, O Volokh, AK Shaytan, FK Hsieh, ... Proceedings of the National Academy of Sciences 112 (43), E5787-E5795, 2015 | 83 | 2015 |
| Molecular mechanisms of human papillomavirus-related carcinogenesis in head and neck cancer F Faraji, M Zaidi, C Fakhry, DA Gaykalova Microbes and infection 19 (9-10), 464-475, 2017 | 81 | 2017 |
| Chromatin dysregulation and DNA methylation at transcription start sites associated with transcriptional repression in cancers M Ando, Y Saito, G Xu, NQ Bui, K Medetgul-Ernar, M Pu, K Fisch, S Ren, ... Nature communications 10 (1), 2188, 2019 | 80 | 2019 |
| Preparation and analysis of uniquely positioned mononucleosomes DA Gaykalova, OI Kulaeva, VA Bondarenko, VM Studitsky Chromatin Protocols: Second Edition, 109-123, 2009 | 71 | 2009 |
| BORIS Binding to the Promoters of Cancer Testis Antigens, MAGEA2, MAGEA3, and MAGEA4, Is Associated with Their Transcriptional Activation in Lung Cancer S Bhan, SS Negi, C Shao, CA Glazer, A Chuang, DA Gaykalova, W Sun, ... Clinical cancer research 17 (13), 4267-4276, 2011 | 69 | 2011 |
| HPV E2, E4, E5 drive alternative carcinogenic pathways in HPV positive cancers S Ren, DA Gaykalova, T Guo, AV Favorov, EJ Fertig, P Tamayo, ... Oncogene 39 (40), 6327-6339, 2020 | 68 | 2020 |
| NF‐κB and stat3 transcription factor signatures differentiate HPV‐positive and HPV‐negative head and neck squamous cell carcinoma DA Gaykalova, JB Manola, H Ozawa, V Zizkova, K Morton, JA Bishop, ... International journal of cancer 137 (8), 1879-1889, 2015 | 57 | 2015 |
| Integrated analysis of whole-genome ChIP-Seq and RNA-Seq data of primary head and neck tumor samples associates HPV integration sites with open chromatin marks DZ Kelley, EL Flam, E Izumchenko, LV Danilova, HA Wulf, T Guo, ... Cancer research 77 (23), 6538-6550, 2017 | 56 | 2017 |
| PatternMarkers & GWCoGAPS for novel data-driven biomarkers via whole transcriptome NMF GL Stein-O’Brien, JL Carey, WS Lee, M Considine, AV Favorov, E Flam, ... Bioinformatics 33 (12), 1892-1894, 2017 | 48 | 2017 |
| Characterization of functionally active gene fusions in human papillomavirus related oropharyngeal squamous cell carcinoma T Guo, DA Gaykalova, M Considine, S Wheelan, A Pallavajjala, JA Bishop, ... International journal of cancer 139 (2), 373-382, 2016 | 48 | 2016 |
| Serum antibodies to HPV16 early proteins warrant investigation as potential biomarkers for risk stratification and recurrence of HPV-associated oropharyngeal cancer C Fakhry, JR Qualliotine, Z Zhang, N Agrawal, DA Gaykalova, JA Bishop, ... Cancer Prevention Research 9 (2), 135-141, 2016 | 48* | 2016 |
| Suprabasin is hypomethylated and associated with metastasis in salivary adenoid cystic carcinoma C Shao, M Tan, JA Bishop, J Liu, W Bai, DA Gaykalova, T Ogawa, ... PloS one 7 (11), e48582, 2012 | 47 | 2012 |
| Integrated single-cell and bulk gene expression and ATAC-seq reveals heterogeneity and early changes in pathways associated with resistance to cetuximab in HNSCC-sensitive cell … LT Kagohara, F Zamuner, EF Davis-Marcisak, G Sharma, M Considine, ... British journal of cancer 123 (1), 101-113, 2020 | 43 | 2020 |
Elana J FertigProfessor of Oncology Biostatistics and Bioinformatics, Sidney Kimmel Comprehensive CancerVerified email at jhmi.edu
