Roger Bumgarner
Roger Bumgarner
Department of Microbiology, University of Washington, Seattle WA
Verified email at
Cited by
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Integrated genomic and proteomic analyses of a systematically perturbed metabolic network
T Ideker, V Thorsson, JA Ranish, R Christmas, J Buhler, JK Eng, ...
Science 292 (5518), 929-934, 2001
Direct multiplexed measurement of gene expression with color-coded probe pairs
GK Geiss, RE Bumgarner, B Birditt, T Dahl, N Dowidar, DL Dunaway, ...
Nature biotechnology 26 (3), 317-325, 2008
The genome of the domesticated apple (Malusdomestica Borkh.)
R Velasco, A Zharkikh, J Affourtit, A Dhingra, A Cestaro, A Kalyanaraman, ...
Nature genetics 42 (10), 833-839, 2010
Gene expression in Pseudomonas aeruginosa biofilms
M Whiteley, MG Bangera, RE Bumgarner, MR Parsek, GM Teitzel, S Lory, ...
Nature 413 (6858), 860-864, 2001
Evolutionary and biomedical insights from the rhesus macaque genome
RA Gibbs, J Rogers, MG Katze, R Bumgarner, GM Weinstock, ER Mardis, ...
science 316 (5822), 222-234, 2007
Benzene forms hydrogen bonds with water
S Suzuki, PG Green, RE Bumgarner, S Dasgupta
Science 257, 942-945, 1992
Bacterial communities in women with bacterial vaginosis: high resolution phylogenetic analyses reveal relationships of microbiota to clinical criteria
S Srinivasan, NG Hoffman, MT Morgan, FA Matsen, TL Fiedler, RW Hall, ...
PloS one 7 (6), e37818, 2012
Overview of DNA microarrays: types, applications, and their future
R Bumgarner
Current protocols in molecular biology 101 (1), 22.1. 1-22.1. 11, 2013
Comparative hybridization of an array of 21 500 ovarian cDNAs for the discovery of genes overexpressed in ovarian carcinomas
M Schummer, WLV Ng, RE Bumgarner, PS Nelson, B Schummer, ...
Gene 238 (2), 375-385, 1999
Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks
J Zhu, B Zhang, EN Smith, B Drees, RB Brem, L Kruglyak, RE Bumgarner, ...
Nature genetics 40 (7), 854-861, 2008
Standardizing global gene expression analysis between laboratories and across platforms
Toxicogenomics Research Consortium Weis BK weis@ niehs. nih. gov 1 b
Nature methods 2 (5), 351-356, 2005
Cellular transcriptional profiling in influenza A virus-infected lung epithelial cells: the role of the nonstructural NS1 protein in the evasion of the host innate defense and …
GK Geiss, M Salvatore, TM Tumpey, VS Carter, X Wang, CF Basler, ...
Proceedings of the National Academy of Sciences 99 (16), 10736-10741, 2002
Bayesian model averaging: development of an improved multi-class, gene selection and classification tool for microarray data
KY Yeung, RE Bumgarner, AE Raftery
Bioinformatics 21 (10), 2394-2402, 2005
other authors (2000). Large-scale monitoring of host cell gene expression during HIV-1 infection using cDNA microassays
GK Geiss, RE Bumgarner, MC An
Virology 266, 8-16, 7
Clustering gene-expression data with repeated measurements
KY Yeung, M Medvedovic, RE Bumgarner
Genome biology 4, 1-17, 2003
Bayesian mixture model based clustering of replicated microarray data
M Medvedovic, KY Yeung, RE Bumgarner
Bioinformatics 20 (8), 1222-1232, 2004
A comprehensive view of regulation of gene expression by double-stranded RNA-mediated cell signaling
G Geiss, G Jin, J Guo, R Bumgarner, MG Katze, GC Sen
Journal of Biological Chemistry 276 (32), 30178-30182, 2001
Cellular Gene Expression upon Human Immunodeficiency Virus Type 1 Infection of CD4+-T-Cell Lines
AB van't Wout, GK Lehrman, SA Mikheeva, GC O'Keeffe, MG Katze, ...
Journal of virology 77 (2), 1392-1402, 2003
Differential gene expression profiling of adult murine hematopoietic stem cells
IK Park, Y He, F Lin, OD Laerum, Q Tian, R Bumgarner, CA Klug, K Li, ...
Blood, The Journal of the American Society of Hematology 99 (2), 488-498, 2002
Interaction of Pseudomonas aeruginosa with epithelial cells: Identification of differentially regulated genes by expression microarray analysis of human cDNAs
JK Ichikawa, A Norris, MG Bangera, GK Geiss, AB van't Wout, ...
Proceedings of the National Academy of Sciences 97 (17), 9659-9664, 2000
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