Rudesh D. Toofanny
Rudesh D. Toofanny
Arzeda Corp.
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Dynameomics: a comprehensive database of protein dynamics
MW van der Kamp, RD Schaeffer, AL Jonsson, AD Scouras, AM Simms, ...
Structure 18 (4), 423-435, 2010
Dynameomics: mass annotation of protein dynamics and unfolding in water by high-throughput atomistic molecular dynamics simulations
DAC Beck, AL Jonsson, RD Schaeffer, KA Scott, R Day, RD Toofanny, ...
Protein Engineering, Design & Selection 21 (6), 353-368, 2008
Dynameomics: design of a computational lab workflow and scientific data repository for protein simulations
AM Simms, RD Toofanny, C Kehl, NC Benson, V Daggett
Protein engineering, design & selection 21 (6), 369-377, 2008
Dynameomics: a multi-dimensional analysis-optimized database for dynamic protein data
C Kehl, AM Simms, RD Toofanny, V Daggett
Protein Engineering, Design & Selection 21 (6), 379-386, 2008
Understanding protein unfolding from molecular simulations
RD Toofanny, V Daggett
Wiley Interdisciplinary Reviews: Computational Molecular Science 2 (3), 405-423, 2012
GB1 is not a two-state folder: identification and characterization of an on-pathway intermediate
A Morrone, R Giri, RD Toofanny, C Travaglini-Allocatelli, M Brunori, ...
Biophysical journal 101 (8), 2053-2060, 2011
A comprehensive multidimensional-embedded, one-dimensional reaction coordinate for protein unfolding/folding
RD Toofanny, AL Jonsson, V Daggett
Biophysical journal 98 (11), 2671-2681, 2010
Simulations of multi-directional forced unfolding of titin I27
RD Toofanny, PM Williams
Journal of Molecular Graphics and Modelling 24 (5), 396-403, 2006
DIVE: a data intensive visualization engine
D Bromley, SJ Rysavy, R Su, RD Toofanny, T Schmidlin, V Daggett
Bioinformatics 30 (4), 593-595, 2014
Evolutionary drivers of protein shape
G Shannon, CR Marples, RD Toofanny, PM Williams
Scientific Reports 9 (1), 11873, 2019
Implementation of 3D spatial indexing and compression in a large-scale molecular dynamics simulation database for rapid atomic contact detection
RD Toofanny, AM Simms, DAC Beck, V Daggett
BMC bioinformatics 12, 1-11, 2011
Shared unfolding pathways of unrelated immunoglobulin-like β-sandwich proteins
RD Toofanny, S Calhoun, AL Jonsson, V Daggett
Protein Engineering, Design and Selection 32 (7), 331-345, 2019
Investigations into the Mechanical Unfolding of Proteins in silico
RD Toofanny
University of Nottingham, 2005
Long time-scale simulations of protein unfolding under force using the stochastic difference equation in length algorithm.
RD Toofanny, PM Williams, R Elber
Biophysical Journal 88 (1), 185A-185A, 2005
Molecular Dynamics Simulations of Consensus Tetratricopeptide Repeat Proteins
RD Toofanny, AL Cortajarena, L Regan, V Daggett
Biophysical Journal 98 (3), 636a-637a, 2010
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