| Profiling the human protein-DNA interactome reveals ERK2 as a transcriptional repressor of interferon signaling S Hu, Z Xie, A Onishi, X Yu, L Jiang, J Lin, H Rho, C Woodard, H Wang, ... Cell 139 (3), 610-622, 2009 | 445 | 2009 |
| TiGER: a database for tissue-specific gene expression and regulation X Liu, X Yu, D Zack, H Zhu, J Qian BMC bioinformatics 9 (1), 271, 2008 | 445 | 2008 |
| Computational analysis of tissue-specific combinatorial gene regulation: predicting interaction between transcription factors in human tissues X Yu, J Lin, DJ Zack, J Qian Nucleic acids research 34 (17), 4925-4936, 2006 | 171 | 2006 |
| Analysis of regulatory network topology reveals functionally distinct classes of microRNAs X Yu, J Lin, DJ Zack, JT Mendell, J Qian Nucleic acids research 36 (20), 6494-6503, 2008 | 97 | 2008 |
| Genome-wide prediction and characterization of interactions between transcription factors in Saccharomyces cerevisiae X Yu, J Lin, T Masuda, N Esumi, DJ Zack, J Qian Nucleic acids research 34 (3), 917-927, 2006 | 93 | 2006 |
| Systems biology approaches for discovering biomarkers for traumatic brain injury JD Feala, MDM AbdulHameed, C Yu, B Dutta, X Yu, K Schmid, JR Dave, ... Journal of Neurotrauma, 2013 | 82 | 2013 |
| Data-driven identification of structural alerts for mitigating the risk of drug-induced human liver injuries R Liu, X Yu, A Wallqvist Journal of cheminformatics 7 (1), 1-8, 2015 | 77 | 2015 |
| Molecular characteristics of liver metastases from uveal melanoma T Meir, R Dror, X Yu, J Qian, I Simon, J Pe’er, I Chowers Investigative ophthalmology & visual science 48 (11), 4890-4896, 2007 | 58 | 2007 |
| Quantum phase and persistent magnetic moment current and Aharonov-Casher effect in as= 1/2 mesoscopic ferromagnetic ring Z Cao, X Yu, R Han Physical Review B 56 (9), 5077, 1997 | 58 | 1997 |
| Influence of protein abundance on high-throughput protein-protein interaction detection J Ivanic, X Yu, A Wallqvist, J Reifman PloS one 4 (6), e5815, 2009 | 48 | 2009 |
| Identification of tissue-specific cis-regulatory modules based on interactions between transcription factors X Yu, J Lin, D Zack, J Qian BMC bioinformatics 8 (1), 437, 2007 | 42 | 2007 |
| Novel Burkholderia mallei Virulence Factors Linked to Specific Host-Pathogen Protein Interactions V Memišević, N Zavaljevski, R Pieper, SV Rajagopala, K Kwon, ... Molecular & Cellular Proteomics 12 (11), 3036-3051, 2013 | 40 | 2013 |
| Characterization of Chemically Induced Liver Injuries Using Gene Co-Expression Modules GJ Tawa, MDM AbdulHameed, X Yu, K Kumar, DL Ippolito, JA Lewis, ... PLOS ONE 9 (9), e107230, 2014 | 38 | 2014 |
| A novel scoring approach for protein co-purification data reveals high interaction specificity X Yu, J Ivanic, A Wallqvist, J Reifman PLoS computational biology 5 (9), e1000515, 2009 | 35 | 2009 |
| Inferring high-confidence human protein-protein interactions X Yu, A Wallqvist, J Reifman BMC Bioinformatics 13 (1), 79, 2012 | 32 | 2012 |
| Categorizing biases in high-confidence high-throughput protein-protein interaction data sets X Yu, J Ivanic, V Memišević, A Wallqvist, J Reifman Molecular & Cellular Proteomics 10 (12), M111. 012500, 2011 | 29 | 2011 |
| Multiscale study of counterion-induced attraction and bundle formation of F-actin using an Ising-like mean-field model X Yu, AE Carlsson Biophysical journal 85 (6), 3532-3543, 2003 | 29 | 2003 |
| Kinetics of filament bundling with attractive interactions X Yu, AE Carlsson Biophysical journal 87 (6), 3679-3689, 2004 | 24 | 2004 |
| A systems biology strategy to identify molecular mechanisms of action and protein indicators of traumatic brain injury C Yu, A Boutté, X Yu, B Dutta, JD Feala, K Schmid, J Dave, GJ Tawa, ... Journal of neuroscience research 93 (2), 199-214, 2015 | 20 | 2015 |
| Transport currents and persistent currents in a mesoscopic loop connected with two reservoirs with two superconducting mirrors Z Cao, X Yu, R Han Journal of Physics: Condensed Matter 10 (17), 3873, 1998 | 4 | 1998 |
C. Jimmy LinJohns Hopkins School of MedicineVerified email at jhmi.edu
