Peter Bond
Peter Bond
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The molecular basis for selective inhibition of unconventional mRNA splicing by an IRE1-binding small molecule
BCS Cross, PJ Bond, PG Sadowski, BK Jha, J Zak, JM Goodman, ...
Proceedings of the National Academy of Sciences 109 (15), E869-E878, 2012
Evidence that TLR4 is not a receptor for saturated fatty acids but mediates lipid-induced inflammation by reprogramming macrophage metabolism
GI Lancaster, KG Langley, NA Berglund, HL Kammoun, S Reibe, ...
Cell metabolism 27 (5), 1096-1110. e5, 2018
Insertion and assembly of membrane proteins via simulation
PJ Bond, MSP Sansom
Journal of the American Chemical Society 128 (8), 2697-2704, 2006
Coarse-grained molecular dynamics simulations of membrane proteins and peptides
PJ Bond, J Holyoake, A Ivetac, S Khalid, MSP Sansom
Journal of structural biology 157 (3), 593-605, 2007
From in silico target prediction to multi-target drug design: Current databases, methods and applications
A Koutsoukas, B Simms, J Kirchmair, PJ Bond, AV Whitmore, S Zimmer, ...
Journal of proteomics 74 (12), 2554-2574, 2011
Computational prediction of metabolism: sites, products, SAR, P450 enzyme dynamics, and mechanisms
J Kirchmair, MJ Williamson, JD Tyzack, L Tan, PJ Bond, A Bender, ...
Journal of chemical information and modeling 52 (3), 617-648, 2012
Coarse-grained MD simulations of membrane protein-bilayer self-assembly
KA Scott, PJ Bond, A Ivetac, AP Chetwynd, S Khalid, MSP Sansom
Structure 16 (4), 621-630, 2008
Design, synthesis, and biological evaluation of an allosteric inhibitor of HSET that targets cancer cells with supernumerary centrosomes
CA Watts, FM Richards, A Bender, PJ Bond, O Korb, O Kern, M Riddick, ...
Chemistry & biology 20 (11), 1399-1410, 2013
Interaction of the Antimicrobial Peptide Polymyxin B1 with Both Membranes of E. coli: A Molecular Dynamics Study
NA Berglund, TJ Piggot, D Jefferies, RB Sessions, PJ Bond, S Khalid
PLoS computational biology 11 (4), e1004180, 2015
SARS-CoV-2 spike protein binds to bacterial lipopolysaccharide and boosts proinflammatory activity
G Petruk, M Puthia, J Petrlova, F Samsudin, AC Str÷mdahl, S Cerps, ...
Journal of Molecular Cell Biology 12 (12), 916-932, 2020
Ion channel gating: insights via molecular simulations
O Beckstein, PC Biggin, P Bond, JN Bright, C Domene, A Grottesi, ...
FEBS letters 555 (1), 85-90, 2003
Membrane protein dynamics versus environment: simulations of OmpA in a micelle and in a bilayer
PJ Bond, MSP Sansom
Journal of molecular biology 329 (5), 1035-1053, 2003
The antibiotic darobactin mimics a β-strand to inhibit outer membrane insertase
H Kaur, RP Jakob, JK Marzinek, R Green, Y Imai, JR Bolla, E Agustoni, ...
Nature 593 (7857), 125-129, 2021
Efficient Characterization of Protein Cavities within Molecular Simulation Trajectories: trj_cavity
T Paramo, A East, D Garzˇn, MB Ulmschneider, PJ Bond
Journal of chemical theory and computation 10 (5), 2151-2164, 2014
Coarse-grained simulation: a high-throughput computational approach to membrane proteins
MSP Sansom, KA Scott, PJ Bond
Biochemical Society Transactions 36 (1), 27-32, 2008
An optical technique for mapping microviscosity dynamics in cellular organelles
JE Chambers, M Kubánková, RG Huber, I López-Duarte, E Avezov, ...
Acs Nano 12 (5), 4398-4407, 2018
Lipid-protein interactions of integral membrane proteins: a comparative simulation study
SS Deol, PJ Bond, C Domene, MSP Sansom
Biophysical Journal 87 (6), 3737-3749, 2004
Bilayer deformation by the Kv channel voltage sensor domain revealed by self-assembly simulations
PJ Bond, MSP Sansom
Proceedings of the National Academy of Sciences 104 (8), 2631-2636, 2007
OmpA: a pore or not a pore? Simulation and modeling studies
PJ Bond, JD Faraldo-Gˇmez, MSP Sansom
Biophysical journal 83 (2), 763-775, 2002
Structure mapping of dengue and Zika viruses reveals functional long-range interactions
RG Huber, XN Lim, WC Ng, AYL Sim, HX Poh, Y Shen, SY Lim, ...
Nature communications 10 (1), 1408, 2019
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