Integrated proteogenomic characterization of clear cell renal cell carcinoma DJ Clark, SM Dhanasekaran, F Petralia, J Pan, X Song, Y Hu, ... Cell 179 (4), 964-983. e31, 2019 | 448 | 2019 |
Proteogenomic characterization of endometrial carcinoma Y Dou, EA Kawaler, DC Zhou, MA Gritsenko, C Huang, L Blumenberg, ... Cell 180 (4), 729-748. e26, 2020 | 325 | 2020 |
Philosopher: a versatile toolkit for shotgun proteomics data analysis F da Veiga Leprevost, SE Haynes, DM Avtonomov, HY Chang, ... Nature methods 17 (9), 869-870, 2020 | 287 | 2020 |
Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma C Huang, L Chen, SR Savage, RV Eguez, Y Dou, Y Li, ... Cancer cell 39 (3), 361-379. e16, 2021 | 220 | 2021 |
Integrated proteogenomic characterization across major histological types of pediatric brain cancer F Petralia, N Tignor, B Reva, M Koptyra, S Chowdhury, D Rykunov, A Krek, ... Cell 183 (7), 1962-1985. e31, 2020 | 208 | 2020 |
Metabolite identification for mass spectrometry-based metabolomics using multiple types of correlated ion information KS Lynn, ML Cheng, YR Chen, C Hsu, A Chen, TM Lih, HY Chang, ... Analytical chemistry 87 (4), 2143-2151, 2015 | 82 | 2015 |
Quantitative proteomic landscape of metaplastic breast carcinoma pathological subtypes and their relationship to triple-negative tumors SI Djomehri, ME Gonzalez, F da Veiga Leprevost, SR Tekula, HY Chang, ... Nature communications 11 (1), 1723, 2020 | 78 | 2020 |
Integrated proteogenomic characterization of clear cell renal cell carcinoma DJ Clark, SM Dhanasekaran, F Petralia, J Pan, X Song, Y Hu, ... Cell 180 (1), 207, 2020 | 52 | 2020 |
Clinical proteomic tumor analysis consortium. Integrated proteogenomic characterization of clear cell renal cell carcinoma DJ Clark, SM Dhanasekaran, F Petralia, J Pan, X Song, Y Hu, ... Cell 179 (4), 964-983, 2019 | 36 | 2019 |
Crystal-C: a computational tool for refinement of open search results HY Chang, AT Kong, F da Veiga Leprevost, DM Avtonomov, SE Haynes, ... Journal of proteome research 19 (6), 2511-2515, 2020 | 26 | 2020 |
iMet-Q: a user-friendly tool for label-free metabolomics quantitation using dynamic peak-width determination HY Chang, CT Chen, TM Lih, KS Lynn, CG Juo, WL Hsu, TY Sung PLOS one 11 (1), e0146112, 2016 | 26 | 2016 |
Identification of tyrosine-phosphorylated proteins associated with lung cancer metastasis using label-free quantitative analyses HY Wu, VS Tseng, LC Chen, HY Chang, IC Chuang, YG Tsay, PC Liao Journal of Proteome Research 9 (8), 4102-4112, 2010 | 17 | 2010 |
MAGIC-web: a platform for untargeted and targeted N-linked glycoprotein identification TM Lih, WK Choong, CC Chen, CW Cheng, HN Lin, CT Chen, HY Chang, ... Nucleic acids research 44 (W1), W575-W580, 2016 | 15 | 2016 |
Informatics view on the challenges of identifying missing proteins from shotgun proteomics WK Choong, HY Chang, CT Chen, CF Tsai, WL Hsu, YJ Chen, TY Sung Journal of Proteome Research 14 (12), 5396-5407, 2015 | 15 | 2015 |
Comparative evaluation of proteome discoverer and FragPipe for the TMT-based proteome quantification T He, Y Liu, Y Zhou, L Li, H Wang, S Chen, J Gao, W Jiang, Y Yu, W Ge, ... Journal of proteome research 21 (12), 3007-3015, 2022 | 13 | 2022 |
ITop-Q: an intelligent tool for top-down proteomics quantitation using DYAMOND algorithm HY Chang, CT Chen, CL Ko, YJ Chen, YJ Chen, WL Hsu, CG Juo, ... Analytical chemistry 89 (24), 13128-13136, 2017 | 2 | 2017 |
Implementing the MSFragger Search Engine as a Node in Proteome Discoverer HY Chang, SE Haynes, F Yu, AI Nesvizhskii Journal of Proteome Research 22 (2), 520-525, 2022 | 1 | 2022 |
Integrated proteogenomic characterization across seven histological types of pediatric brain tumors F Petralia, N Tignor, B Reva, P Raman, S Chowdhury, D Rykunov, A Krek, ... Cancer Research 80 (16_Supplement), 445-445, 2020 | 1 | 2020 |
Tailored therapeutic decision of rheumatoid arthritis using proteomic strategies: how to start and when to stop? SF Chen, FC Yeh, CY Chen, HY Chang Clinical Proteomics 20 (1), 22, 2023 | | 2023 |
Multi-Q 2: automated and robust isobaric labeling quantitation analysis with enhanced graphical visualization of protein ratio clustering CT Chen, CW Cheng, WJ Hsu, HY Chang, CL Ko, TM Lih, YJ Chen, ... | | 2017 |