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Yunfan Fan
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Targeted nanopore sequencing by real-time mapping of raw electrical signal with UNCALLED
S Kovaka, Y Fan, B Ni, W Timp, MC Schatz
Nature biotechnology 39 (4), 431-441, 2021
2192021
Nanopore sequencing detects structural variants in cancer
AL Norris, RE Workman, Y Fan, JR Eshleman, W Timp
Cancer biology & therapy 17 (3), 246-253, 2016
1762016
Applying rapid whole-genome sequencing to predict phenotypic antimicrobial susceptibility testing results among carbapenem-resistant Klebsiella pneumoniae clinical isolates
PD Tamma, Y Fan, Y Bergman, G Pertea, AQ Kazmi, S Lewis, KC Carroll, ...
Antimicrobial agents and chemotherapy 63 (1), e01923-18, 2019
762019
Genomic diversity of SARS-CoV-2 during early introduction into the Baltimore–Washington metropolitan area
PM Thielen, S Wohl, T Mehoke, S Ramakrishnan, M Kirsche, ...
JCI insight 6 (6), 2021
46*2021
Transmission and clearance of potential procarcinogenic bacteria during fecal microbiota transplantation for recurrent Clostridioides difficile
JL Drewes, A Corona, U Sanchez, Y Fan, SK Hourigan, M Weidner, ...
JCI insight 4 (19), 2019
452019
Successful treatment of persistent Burkholderia cepacia complex bacteremia with ceftazidime-avibactam
PD Tamma, Y Fan, Y Bergman, AC Sick-Samuels, AJ Hsu, W Timp, ...
Antimicrobial agents and chemotherapy 62 (4), 10.1128/aac. 02213-17, 2018
432018
A plasmid locus associated with Klebsiella clinical infections encodes a microbiome-dependent gut fitness factor
J Vornhagen, CM Bassis, S Ramakrishnan, R Hein, S Mason, Y Bergman, ...
PLoS pathogens 17 (4), e1009537, 2021
302021
De novo genome assembly of the tobacco hornworm moth (Manduca sexta)
A Gershman, TG Romer, Y Fan, R Razaghi, WA Smith, W Timp
G3 11 (1), jkaa047, 2021
282021
First Draft Genome Sequence of the Pathogenic Fungus Lomentospora prolificans (Formerly Scedosporium prolificans)
R Luo, A Zimin, R Workman, Y Fan, G Pertea, N Grossman, MP Wear, ...
G3: Genes, Genomes, Genetics 7 (11), 3831-3836, 2017
142017
Multiplexed analysis of fixed tissue RNA using Ligation in situ Hybridization
JJ Credle, CY Itoh, T Yuan, R Sharma, ER Scott, RE Workman, Y Fan, ...
Nucleic acids research 45 (14), e128-e128, 2017
132017
Network analysis of protein adaptation: modeling the functional impact of multiple mutations
V Beleva Guthrie, DL Masica, A Fraser, J Federico, Y Fan, M Camps, ...
Molecular biology and evolution 35 (6), 1507-1519, 2018
112018
Similar evolutionary trajectories in an environmental Cryptococcus neoformans isolate after human and murine infection
P Sephton-Clark, SA McConnell, N Grossman, RP Baker, Q Dragotakes, ...
Proceedings of the National Academy of Sciences 120 (2), e2217111120, 2023
9*2023
Comprehensive screening of a light-inducible split Cre recombinase with domain insertion profiling
N Tague, V Andreani, Y Fan, W Timp, MJ Dunlop
ACS Synthetic Biology 12 (10), 2834-2842, 2023
22023
Genome and transcriptome of a pathogenic yeast, Candida nivariensis
Y Fan, AN Gale, A Bailey, K Barnes, K Colotti, M Mass, LB Morina, ...
G3 11 (7), jkab137, 2021
22021
Treatment of Sindbis virus-infected neurons with antibody to E2 alters synthesis of complete and nsP1-expressing defective viral RNAs
JX Yeh, Y Fan, ML Bartlett, X Zhang, N Sadowski, DA Hauer, W Timp, ...
Mbio 13 (5), e02221-22, 2022
12022
Multicentre genetic diversity study of carbapenem-resistant Enterobacterales: predominance of untypeable pUVA-like blaKPC bearing plasmids
PJ Simner, Y Bergman, Y Fan, EB Jacobs, S Ramakrishnan, J Lu, S Lewis, ...
JAC-Antimicrobial Resistance 5 (3), dlad061, 2023
2023
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