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James Liman
James Liman
Graduate Research Assistant, Center for Theoretical Biological Physics, Rice University
Verified email at rice.edu
Title
Cited by
Cited by
Year
The role of the Arp2/3 complex in shaping the dynamics and structures of branched actomyosin networks
J Liman, C Bueno, Y Eliaz, NP Schafer, MN Waxham, PG Wolynes, ...
Proceedings of the National Academy of Sciences 117 (20), 10825-10831, 2020
322020
A generalized Flory-Stockmayer kinetic theory of connectivity percolation and rigidity percolation of cytoskeletal networks
C Bueno, J Liman, NP Schafer, MS Cheung, PG Wolynes
PLoS Computational Biology 18 (5), e1010105, 2022
42022
Forecasting avalanches in branched actomyosin networks with network science and Machine learning
C Li, J Liman, Y Eliaz, MS Cheung
The Journal of Physical Chemistry B 125 (42), 11591-11605, 2021
32021
The role of actin-binding proteins in shaping the dynamics and structures of actomyosin networks
J Liman
2022
Exploring the impact of Arp2/3 concentration on actomyosin dynamics
C Li, J Liman, Y Eliaz, MS Cheung
Biophysical Journal 120 (3), 161a-162a, 2021
2021
Application of Flory-Stockmayer Theory to Actomyosin Networks Reveals Multiple Connectivity States that Give Rise to Distinct Behaviors of the Network
CAB Basurco, J Liman, NP Schafer, MS Cheung, PG Wolynes
Biophysical Journal 120 (3), 160a, 2021
2021
Distinct connectivity states in actomyosin networks described using the Flory-Stockmayer theory.
C Bueno, J Liman, N Schafer, M Cheung, P Wolynes
APS March Meeting Abstracts 2021, V11. 005, 2021
2021
Rare convulsive movements observed in simulations of motorized actin networks with the Arp2/3 complex
J Liman, C Bueno, Y Eliaz, N Waxham, P Wolynes, H Levine, M Cheung
APS March Meeting Abstracts 2021, E11. 003, 2021
2021
Avalanches in simulations of branched actomyosin networks with the Arp2/3 complex
J Liman, C Bueno, Y Eliaz, N Schafer, N Waxham, P Wolynes, H Levine, ...
Bulletin of the American Physical Society 65, 2020
2020
Exploring the effects of actin-binding proteins on the percolation of actin networks using a mean field model
C Bueno, J Liman, N Schafer, M Cheung, P Wolynes
Bulletin of the American Physical Society 65, 2020
2020
The role of the actin filament brancher Arp2/3 in the dynamics and structures of actomyosin networks
J Liman, C Bueno, Y Eliaz, P Wolynes, H Levine, M Cheung
APS March Meeting Abstracts 2019, F64. 007, 2019
2019
Sol-gel transition in the actin cytoskeleton
C Bueno, J Liman, Y Eliaz, H Levine, M Cheung, P Wolynes
APS March Meeting Abstracts 2019, L70. 337, 2019
2019
Modeling of Actomyosin Networks with a Molecular Underpinning of Cross-Linker Proteins
J Liman, Y Eliaz, H Levine, MS Cheung
Biophysical Journal 114 (3), 143a, 2018
2018
Nucleosome [Mis] Positioning, Chromatin Folding and a Computational Karyotype
R Abcede, J Liman, V Bamburg, J Bell, W Johnston, TC Bishop
2013
Developing the Interactive Chromatin Modeling Program
J Bell, R Abcede, W Johnston, J Liman, V Bamburg, TC Bishop
2013
57 Nucleosome [mis] positioning, chromatin folding, and a computational karyotype
V Bamburg, W Johnston, J Liman, J Solow, TC Bishop
Journal of Biomolecular Structure and Dynamics 31 (sup1), 35-36, 2013
2013
Nucleosome Binding in Highly Occupied Sequences
TCB Victoria Bamburg, James Solow, Ronald Brown, James Liman
2012
Geometric Analysis of DNA in Molecular Dynamics Simulations of Nucleosomes
TCB Rocky Brown, Victoria Bamburg, James Liman, James Solow
2012
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