| Genetic and mechanistic diversity of piRNA 3′-end formation R Hayashi, J Schnabl, D Handler, F Mohn, SL Ameres, J Brennecke Nature 539 (7630), 588-592, 2016 | 132 | 2016 |
| Drosophila patterning is established by differential association of mRNAs with P bodies TT Weil, RM Parton, B Herpers, J Soetaert, T Veenendaal, D Xanthakis, ... Nature cell biology 14 (12), 1305-1313, 2012 | 127 | 2012 |
| Piwi is required to limit exhaustion of aging somatic stem cells P Sousa-Victor, A Ayyaz, R Hayashi, Y Qi, DT Madden, VV Lunyak, ... Cell reports 20 (11), 2527-2537, 2017 | 81 | 2017 |
| The exon junction complex is required for definition and excision of neighboring introns in Drosophila R Hayashi, D Handler, D Ish-Horowicz, J Brennecke Genes & development 28 (16), 1772-1785, 2014 | 67 | 2014 |
| Macrophage development and activation involve coordinated intron retention in key inflammatory regulators ID Green, N Pinello, R Song, Q Lee, JM Halstead, CT Kwok, ACH Wong, ... Nucleic Acids Research 48 (12), 6513-6529, 2020 | 53 | 2020 |
| Standardized practices for RNA diagnostics using clinically accessible specimens reclassifies 75% of putative splicing variants AM Bournazos, LG Riley, S Bommireddipalli, L Ades, LS Akesson, ... Genetics in medicine 24 (1), 130-145, 2022 | 49 | 2022 |
| Simultaneous identification of m6A and m5C reveals coordinated RNA modification at single-molecule resolution PA Mateos, AJ Sethi, A Ravindran, A Srivastava, M Kanchi, S Mahmud, ... BioRxiv, 2022.03. 14.484124, 2022 | 16 | 2022 |
| A Genetic Screen Based on in Vivo RNA Imaging Reveals Centrosome-Independent Mechanisms for Localizing gurken Transcripts in Drosophila R Hayashi, SM Wainwright, SJ Liddell, SM Pinchin, S Horswell, ... G3: Genes, Genomes, Genetics 4 (4), 749-760, 2014 | 13 | 2014 |
| Nuclear respiratory factor 2 activates transcription of human mitochondrial translation initiation factor 2 gene R Hayashi, T Ueda, MA Farwell, N Takeuchi Mitochondrion 7 (3), 195-203, 2007 | 13 | 2007 |
| Structure-function analysis of microRNA 3′-end trimming by Nibbler W Xie, I Sowemimo, R Hayashi, J Wang, TR Burkard, J Brennecke, ... Proceedings of the National Academy of Sciences 117 (48), 30370-30379, 2020 | 9 | 2020 |
| Identification of m6A and m5C RNA modifications at single-molecule resolution from Nanopore sequencing PA Mateos, AJ Sethi, M Guarnacci, A Ravindran, A Srivastava, J Xu, ... bioRxiv, 2022 | 8 | 2022 |
| The absence of core piRNA biogenesis factors does not impact efficient transposon silencing in Drosophila S Chary, R Hayashi Plos Biology 21 (6), e3002099, 2023 | 7 | 2023 |
| Population genomic time series data of a natural population suggests adaptive tracking of fluctuating environmental changes M Pfenninger, Q Foucault Integrative and Comparative Biology 62 (6), 1812-1826, 2022 | 6 | 2022 |
| Nuclear respiratory factor 2β (NRF-2β) recruits NRF-2α to the nucleus by binding to importin-α: β via an unusual monopartite-type nuclear localization signal R Hayashi, N Takeuchi, T Ueda Journal of molecular biology 425 (18), 3536-3548, 2013 | 6 | 2013 |
| Cloning, sequencing, and linkage analysis of piRNAs R Hayashi piRNA: Methods and Protocols, 107-133, 2022 | 5 | 2022 |
| Mechanistic insights into RNA surveillance by the canonical poly (A) polymerase Pla1 of the MTREC complex K Soni, A Sivadas, A Horvath, N Dobrev, R Hayashi, L Kiss, B Simon, ... Nature Communications 14 (1), 772, 2023 | 4 | 2023 |
| Prediction of m6A and m5C at single-molecule resolution reveals a cooccurrence of RNA modifications across the transcriptome P Acera Mateos, AJ Sethi, A Ravindran, A Srivastava, K Woodward, ... bioRxiv, 2024 | 2 | 2024 |
| Mechanistic divergence of piRNA biogenesis in Drosophila S Chary, R Hayashi bioRxiv, 2022.11. 14.516378, 2022 | 2 | 2022 |
| R2Dtool: Positional interpretation of RNA-centric information in the context of transcriptomic and genomic features AJ Sethi, PA Mateos, R Hayashi, N Shirokikh, E Eyras bioRxiv, 2022.09. 23.509222, 2022 | 2 | 2022 |
| A germline PAF1 paralog complex ensures cell type-specific gene expression AP Vilstrup, A Gupta, AJ Rasmussen, A Ebert, S Riedelbauch, ... bioRxiv, 2024.05. 02.592153, 2024 | | 2024 |
