| Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments VC Seitan, AJ Faure, Y Zhan, RP McCord, BR Lajoie, E Ing-Simmons, ... Genome research 23 (12), 2066-2077, 2013 | 365 | 2013 |
| Control of inducible gene expression links cohesin to hematopoietic progenitor self-renewal and differentiation S Cuartero, FD Weiss, G Dharmalingam, Y Guo, E Ing-Simmons, ... Nature immunology 19 (9), 932-941, 2018 | 182 | 2018 |
| Spatial enhancer clustering and regulation of enhancer-proximal genes by cohesin E Ing-Simmons, VC Seitan, AJ Faure, P Flicek, T Carroll, J Dekker, ... Genome research 25 (4), 504-513, 2015 | 173 | 2015 |
| Topologically associating domains are ancient features that coincide with Metazoan clusters of extreme noncoding conservation N Harmston, E Ing-Simmons, G Tan, M Perry, M Merkenschlager, ... Nature communications 8 (1), 1-13, 2017 | 172 | 2017 |
| Independence of chromatin conformation and gene regulation during Drosophila dorsoventral patterning E Ing-Simmons, R Vaid, XY Bing, M Levine, M Mannervik, JM Vaquerizas Nature Genetics 53 (4), 487-499, 2021 | 111 | 2021 |
| GenomicInteractions: An R/Bioconductor package for manipulating and investigating chromatin interaction data N Harmston, E Ing-Simmons, M Perry, A Barešić, B Lenhard BMC Genomics 16 (1), 963, 2015 | 59 | 2015 |
| Infrastructure for genomic interactions: Bioconductor classes for Hi-C, ChIA-PET and related experiments ATL Lun, M Perry, E Ing-Simmons F1000Research 5, 2016 | 42 | 2016 |
| Emerging mechanisms and dynamics of three-dimensional genome organisation at zygotic genome activation E Ing-Simmons, M Rigau, JM Vaquerizas Current Opinion in Cell Biology 74, 37-46, 2022 | 12 | 2022 |
| Visualising three-dimensional genome organisation in two dimensions E Ing-Simmons, JM Vaquerizas Development 146 (19), dev177162, 2019 | 10 | 2019 |
| Feedforward regulation of Myc coordinates lineage-specific with housekeeping gene expression during B cell progenitor cell differentiation I Ferreirós-Vidal, T Carroll, T Zhang, V Lagani, RN Ramirez, ... PLOS Biology 17 (4), e2006506, 2019 | 8 | 2019 |
| Early developmental plasticity enables the induction of an intermediate extraembryonic cell state A Sathyanarayanan, E Ing-Simmons, R Chen, HW Jeong, HO Ozguldez, ... Science Advances 8 (44), eabl9583, 2022 | 4 | 2022 |
| Oncometabolite Tinkers with Genome Folding, Boosting Oncogene Expression E Ing-Simmons, M Merkenschlager Trends in molecular medicine 22 (3), 185-187, 2016 | 4 | 2016 |
| Ronin governs the metabolic capacity of the embryonic lineage for post‐implantation development K Salewskij, T Gross‐Thebing, E Ing‐Simmons, B Duethorn, B Rieger, ... EMBO reports 22 (11), e53048, 2021 | 3 | 2021 |
| Reply to: Revisiting the use of structural similarity index in Hi-C E Ing-Simmons, N Machnik, JM Vaquerizas Nature Genetics, 1-3, 2023 | 1 | 2023 |
| Doxorubicin Changes the Spatial Organization of the Genome around Active Promoters ME Stefanova, E Ing-Simmons, S Stefanov, I Flyamer, H Dorado Garcia, ... Cells 12 (15), 2001, 2023 | 1 | 2023 |
| SSIM can robustly identify changes in 3D genome conformation maps E Ing-Simmons, N Machnik, JM Vaquerizas bioRxiv, 2021.10. 18.464422, 2021 | 1 | 2021 |
| The role of cohesin in long-range gene regulation E Simmons Imperial College London, 2017 | | 2017 |
