Charles Tapley Hoyt
Charles Tapley Hoyt
Harvard Medical School
Verified email at - Homepage
Cited by
Cited by
A case study on the parametric occurrence of multiple steady states
R Bradford, JH Davenport, M England, H Errami, V Gerdt, D Grigoriev, ...
Proceedings of the 2017 ACM on International Symposium on Symbolic and …, 2017
The impact of pathway database choice on statistical enrichment analysis and predictive modeling
S Mubeen, CT Hoyt, A Gemünd, M Hofmann-Apitius, H Fröhlich, ...
Frontiers in genetics 10, 1203, 2019
ComPath: an ecosystem for exploring, analyzing, and curating mappings across pathway databases
D Domingo-Fernández, CT Hoyt, C Bobis-Álvarez, J Marín-Llaó, ...
NPJ systems biology and applications 4 (1), 1-8, 2018
PyBEL: a computational framework for Biological Expression Language
CT Hoyt, A Konotopez, C Ebeling
Bioinformatics 34 (4), 703-704, 2018
Repurposing human PDE4 inhibitors for neglected tropical diseases: Design, synthesis and evaluation of cilomilast analogues as Trypanosoma brucei PDEB1 …
E Amata, ND Bland, CT Hoyt, L Settimo, RK Campbell, MP Pollastri
Bioorganic & medicinal chemistry letters 24 (17), 4084-4089, 2014
BioKEEN: a library for learning and evaluating biological knowledge graph embeddings
M Ali, CT Hoyt, D Domingo-Fernández, J Lehmann, H Jabeen
Bioinformatics 35 (18), 3538-3540, 2019
PathMe: Merging and exploring mechanistic pathway knowledge
D Domingo-Fernández, S Mubeen, J Marín-Llaó, CT Hoyt, ...
BMC bioinformatics 20 (1), 1-12, 2019
PyKEEN 1.0: A python library for training and evaluating knowledge graph emebddings
M Ali, M Berrendorf, CT Hoyt, L Vermue, S Sharifzadeh, V Tresp, ...
arXiv preprint arXiv:2007.14175, 2020
Bringing light into the dark: A large-scale evaluation of knowledge graph embedding models under a unified framework
M Ali, M Berrendorf, CT Hoyt, L Vermue, M Galkin, S Sharifzadeh, ...
arXiv preprint arXiv:2006.13365, 2020
A computational approach for mapping heme biology in the context of hemolytic disorders
F Humayun, D Domingo-Fernández, AA Paul George, MT Hopp, ...
Frontiers in bioengineering and biotechnology 8, 74, 2020
Challenges of integrative disease modeling in Alzheimer's disease
S Golriz Khatami, C Robinson, C Birkenbihl, D Domingo-Fernández, ...
Frontiers in molecular biosciences 6, 158, 2020
The minimum information about a molecular interaction causal statement (MI2CAST)
V Touré, S Vercruysse, ML Acencio, RC Lovering, S Orchard, G Bradley, ...
Bioinformatics 36 (24), 5712-5718, 2020
Identifying the parametric occurrence of multiple steady states for some biological networks
R Bradford, JH Davenport, M England, H Errami, V Gerdt, D Grigoriev, ...
Journal of Symbolic Computation 98, 84-119, 2020
The KEEN Universe
M Ali, H Jabeen, CT Hoyt, J Lehmann
ISWC 2019, 2019
BEL Commons: an environment for exploration and analysis of networks encoded in Biological Expression Language
CT Hoyt, D Domingo-Fernández, M Hofmann-Apitius
Database 2018, 2018
Re-curation and rational enrichment of knowledge graphs in biological expression language
CT Hoyt, D Domingo-Fernández, R Aldisi, L Xu, K Kolpeja, S Spalek, ...
Database 2019, 2019
A systematic approach for identifying shared mechanisms in epilepsy and its comorbidities
CT Hoyt, D Domingo-Fernández, N Balzer, A Güldenpfennig, ...
Database 2018, 2018
PS4DR: A multimodal workflow for identification and prioritization of drugs based on pathway signatures
MA Emon, D Domingo-Fernández, CT Hoyt, M Hofmann-Apitius
BMC bioinformatics 21, 1-21, 2020
Integration of structured biological data sources using biological expression language
CT Hoyt, D Domingo-Fernández, S Mubeen, JM Llaó, A Konotopez, ...
Biorxiv, 631812, 2019
The role of metadata in reproducible computational research
J Leipzig, D Nüst, CT Hoyt, K Ram, J Greenberg
Patterns 2 (9), 100322, 2021
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