| Integrated proteogenomic characterization of clear cell renal cell carcinoma DJ Clark, SM Dhanasekaran, F Petralia, J Pan, X Song, Y Hu, ... Cell 179 (4), 964-983. e31, 2019 | 443 | 2019 |
| Identification of modified peptides using localization-aware open search F Yu, GC Teo, AT Kong, SE Haynes, DM Avtonomov, DJ Geiszler, ... Nature communications 11 (1), 4065, 2020 | 154 | 2020 |
| PTM-Shepherd: analysis and summarization of post-translational and chemical modifications from open search results DJ Geiszler, AT Kong, DM Avtonomov, F Yu, F da Veiga Leprevost, ... Molecular & Cellular Proteomics 20, 2021 | 72 | 2021 |
| Integrated proteogenomic characterization of clear cell renal cell carcinoma DJ Clark, SM Dhanasekaran, F Petralia, J Pan, X Song, Y Hu, ... Cell 180 (1), 207, 2020 | 52 | 2020 |
| Clinical proteomic tumor analysis consortium. Integrated proteogenomic characterization of clear cell renal cell carcinoma DJ Clark, SM Dhanasekaran, F Petralia, J Pan, X Song, Y Hu, ... Cell 179 (4), 964-983, 2019 | 36 | 2019 |
| Enhancing cysteine chemoproteomic coverage through systematic assessment of click chemistry product fragmentation T Yan, AB Palmer, DJ Geiszler, DA Polasky, LM Boatner, NR Burton, ... Analytical Chemistry 94 (9), 3800-3810, 2022 | 21 | 2022 |
| Multiattribute glycan identification and FDR control for glycoproteomics DA Polasky, DJ Geiszler, F Yu, AI Nesvizhskii Molecular & Cellular Proteomics 21 (3), 2022 | 16 | 2022 |
| MSFragger-Labile: A Flexible Method to Improve Labile PTM Analysis in Proteomics DA Polasky, DJ Geiszler, F Yu, K Li, GC Teo, AI Nesvizhskii Molecular & Cellular Proteomics 22 (5), 2023 | 10 | 2023 |
| Detecting diagnostic features in MS/MS spectra of post-translationally modified peptides DJ Geiszler, DA Polasky, F Yu, AI Nesvizhskii Nature Communications 14 (1), 4132, 2023 | 7 | 2023 |
| Solid-phase compatible silane-based cleavable linker enables custom isobaric quantitative chemoproteomics NR Burton, DA Polasky, F Shikwana, S Ofori, T Yan, DJ Geiszler, ... Journal of the American Chemical Society 145 (39), 21303-21318, 2023 | 5 | 2023 |
| Mining for ions: diagnostic feature detection in MS/MS spectra of post-translationally modified peptides DJ Geiszler, DA Polasky, F Yu, AI Nesvizhskii bioRxiv, 2022.09. 12.507594, 2022 | 5 | 2022 |
| Computational Methods for Characterizing Post-translational and Chemical Modifications Found in Open Searches D Geiszler | 1 | 2022 |
| Enhancing Cysteine Chemoproteomic Coverage Through Systematic Assessment of Click Chemistry Product Fragmentation T Yan, A Palmer, D Geiszler, D Polansky, E Armenta, A Nesvizhskii, ... | 1 | 2021 |
| Enhancing multiplexed cysteine chemoproteomics by uniting FragPipe with solid-phase compatible dialkoxydiphenylsilane reagents N Burton, D Polasky, F Shikwanna, S Ofori, T Yan, D Geiszler, ... | | 2023 |
Alexey NesvizhskiiGodfrey D. Stobbe Professor of Bioinformatics @ University of MichiganVerified email at umich.edu
