Wataru Shinoda
Title
Cited by
Cited by
Year
Rapid estimation of elastic constants by molecular dynamics simulation under constant stress
W Shinoda, M Shiga, M Mikami
Physical Review B 69 (13), 134103, 2004
6252004
Coarse-graining of condensed phase and biomolecular systems
GA Voth
CRC Press, 2008
6002008
Large-scale molecular dynamics simulations of self-assembling systems
ML Klein, W Shinoda
Science 321 (5890), 798-800, 2008
3922008
Multi-property fitting and parameterization of a coarse grained model for aqueous surfactants
W Shinoda, R DeVane, ML Klein
Molecular Simulation 33 (1-2), 27-36, 2007
3602007
Molecular dynamics simulation of swollen membrane of perfluorinated ionomer
S Urata, J Irisawa, A Takada, W Shinoda, S Tsuzuki, M Mikami
The Journal of Physical Chemistry B 109 (9), 4269-4278, 2005
2162005
Zwitterionic lipid assemblies: molecular dynamics studies of monolayers, bilayers, and vesicles using a new coarse grain force field
W Shinoda, R DeVane, ML Klein
The Journal of Physical Chemistry B 114 (20), 6836-6849, 2010
2092010
Molecular dynamics simulations of ionic liquids: cation and anion dependence of self-diffusion coefficients of ions
S Tsuzuki, W Shinoda, H Saito, M Mikami, H Tokuda, M Watanabe
The Journal of Physical Chemistry B 113 (31), 10641-10649, 2009
2062009
Coarse-grained molecular modeling of non-ionic surfactant self-assembly
W Shinoda, R DeVane, ML Klein
Soft Matter 4 (12), 2454-2462, 2008
2042008
Molecular dynamics study on the effects of chain branching on the physical properties of lipid bilayers: 2. Permeability
W Shinoda, M Mikami, T Baba, M Hato
The Journal of Physical Chemistry B 108 (26), 9346-9356, 2004
1422004
Transferable coarse grain nonbonded interaction model for amino acids
R DeVane, W Shinoda, PB Moore, ML Klein
Journal of Chemical Theory and Computation 5 (8), 2115-2124, 2009
1122009
Permeability across lipid membranes
W Shinoda
Biochimica et Biophysica Acta (BBA)-Biomembranes 1858 (10), 2254-2265, 2016
1052016
A Voronoi analysis of lipid area fluctuation in a bilayer
W Shinoda, S Okazaki
The Journal of Chemical Physics 109 (4), 1517-1521, 1998
991998
Cholesterol effect on water permeability through DPPC and PSM lipid bilayers: a molecular dynamics study
H Saito, W Shinoda
The Journal of Physical Chemistry B 115 (51), 15241-15250, 2011
962011
Computer simulation studies of self-assembling macromolecules
W Shinoda, R DeVane, ML Klein
Current Opinion in Structural Biology 22 (2), 175-186, 2012
942012
United-atom acyl chains for CHARMM phospholipids
J Hénin, W Shinoda, ML Klein
The Journal of Physical Chemistry B 112 (23), 7008-7015, 2008
842008
Comparative molecular dynamics study of ether-and ester-linked phospholipid bilayers
K Shinoda, W Shinoda, T Baba, M Mikami
The Journal of Chemical Physics 121 (19), 9648-9654, 2004
812004
Rigid‐body dynamics in the isothermal‐isobaric ensemble: A test on the accuracy and computational efficiency
W Shinoda, M Mikami
Journal of Computational Chemistry 24 (8), 920-930, 2003
782003
Molecular dynamics study of a lipid bilayer: convergence, structure, and long-time dynamics
W Shinoda, N Namiki, S Okazaki
The Journal of Chemical Physics 106 (13), 5731-5743, 1997
761997
Molecular dynamics study of bipolar tetraether lipid membranes
W Shinoda, K Shinoda, T Baba, M Mikami
Biophysical Journal 89 (5), 3195-3202, 2005
732005
Micellization studied by GPU-accelerated coarse-grained molecular dynamics
BG Levine, DN LeBard, R DeVane, W Shinoda, A Kohlmeyer, ML Klein
Journal of Chemical Theory and Computation 7 (12), 4135-4145, 2011
692011
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Articles 1–20