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The Genomes of Oryza sativa: A History of Duplications
J Yu, J Wang, W Lin, S Li, H Li, J Zhou, P Ni, W Dong, S Hu, C Zeng, ...
PLoS biology 3 (2), e38, 2005
A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms
Genome sequence of red jungle fowl: Washington University School of Medicine ...
Nature 432 (7018), 717-722, 2004
Bookmarking by specific and nonspecific binding of FoxA1 pioneer factor to mitotic chromosomes
JM Caravaca, G Donahue, JS Becker, X He, C Vinson, KS Zaret
Genes & Development 27 (3), 251-260, 2013
SilkDB: a knowledgebase for silkworm biology and genomics
J Wang, Q Xia, X He, M Dai, J Ruan, J Chen, G Yu, H Yuan, Y Hu, R Li, ...
Nucleic acids research 33 (suppl_1), D399-D402, 2005
MethyCancer: the database of human DNA methylation and cancer
X He, S Chang, J Zhang, Q Zhao, H Xiang, K Kusonmano, L Yang, ...
Nucleic acids research 36 (suppl_1), D836-D841, 2008
Evolution of an antifreeze protein by neofunctionalization under escape from adaptive conflict
C Deng, CHC Cheng, H Ye, X He, L Chen
Proceedings of the National Academy of Sciences 107 (50), 21593-21598, 2010
CG methylated microarrays identify a novel methylated sequence bound by the CEBPB| ATF4 heterodimer that is active in vivo
IK Mann, R Chatterjee, J Zhao, X He, MT Weirauch, TR Hughes, C Vinson
Genome research 23 (6), 988-997, 2013
BGI‐RIS: an integrated information resource and comparative analysis workbench for rice genomics
W Zhao, J Wang, X He, X Huang, Y Jiao, M Dai, S Wei, J Fu, Y Chen, ...
Nucleic acids research 32 (suppl_1), D377-D382, 2004
The E protein is a multifunctional membrane protein of SARS-CoV
Q Wu, Y Zhang, H Lü, J Wang, X He, Y Liu, C Ye, W Lin, J Hu, J Ji, J Xu, ...
Genomics, Proteomics and Bioinformatics 1 (2), 131-144, 2003
ChickVD: a sequence variation database for the chicken genome
J Wang, X He, J Ruan, M Dai, J Chen, Y Zhang, Y Hu, C Ye, S Li, L Cong, ...
Nucleic acids research 33 (suppl_1), D438-D441, 2005
Exogenous coronavirus interacts with endogenous retrotransposon in human cells
Y Yin, X Liu, X He, L Zhou
Frontiers in cellular and infection microbiology 11, 609160, 2021
High levels of serum β2-microglobulin predict severity of coronary artery disease
L You, R Xie, H Hu, G Gu, H Zheng, J Zhang, X Yang, X He, W Cui
BMC cardiovascular disorders 17, 1-8, 2017
Transcriptome sequencing unravels potential biomarkers at different stages of cerebral ischemic stroke
Y Cai, Y Zhang, X Ke, Y Guo, C Yao, N Tang, P Pang, G Xie, L Fang, ...
Frontiers in genetics 10, 814, 2019
Integrating epigenomics into the understanding of biomedical insight
Y Han, X He
Bioinformatics and Biology insights 10, BBI. S38427, 2016
A new noncoding RNA arranges bacterial chromosome organization
Z Qian, M Macvanin, EK Dimitriadis, X He, V Zhurkin, S Adhya
MBio 6 (4), 10.1128/mbio. 00998-15, 2015
Methylated cytosines mutate to transcription factor binding sites that drive tetrapod evolution
X He, D Tillo, J Vierstra, KS Syed, C Deng, GJ Ray, ...
Genome biology and evolution 7 (11), 3155-3169, 2015
5-Hydroxymethylcytosine in E-box motifs ACAT| GTG and ACAC| GTG increases DNA-binding of the B-HLH transcription factor TCF4
S Khund-Sayeed, X He, T Holzberg, J Wang, D Rajagopal, S Upadhyay, ...
Integrative Biology 8 (9), 936-945, 2016
Contribution of nucleosome binding preferences and co-occurring DNA sequences to transcription factor binding
X He, R Chatterjee, S John, H Bravo, BK Sathyanarayana, SC Biddie, ...
BMC genomics 14, 1-15, 2013
Genome-wide screen and validation of microglia pro-inflammatory mediators in stroke
J Wu, Z Wu, A He, T Zhang, P Zhang, J Jin, S Li, G Li, X Li, S Liang, L Pei, ...
Aging and disease 12 (3), 786, 2021
The Epstein-Barr virus B-ZIP protein Zta recognizes specific DNA sequences containing 5-methylcytosine and 5-hydroxymethylcytosine
D Tillo, S Ray, KS Syed, MR Gaylor, X He, J Wang, N Assad, SR Durell, ...
Biochemistry 56 (47), 6200-6210, 2017
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