John Kececioglu
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A tool for multiple sequence alignment
DJ Lipman, SF Altschul, JD Kececioglu
Proceedings of the National Academy of Sciences 86 (12), 4412-4415, 1989
Exact and approximation algorithms for sorting by reversals, with application to genome rearrangement
J Kececioglu, D Sankoff
Algorithmica 13 (1), 180-210, 1995
Combinatorial algorithms for DNA sequence assembly
JD Kececioglu, EW Myers
Algorithmica 13 (1), 7-51, 1995
Improving the practical space and time efficiency of the shortest-paths approach to sum-of-pairs multiple sequence alignment
SK Gupta, JD Kececioglu, AA Schäffer
Journal of Computational Biology 2 (3), 459-472, 1995
Multiple alignment by aligning alignments
TJ Wheeler, JD Kececioglu
Bioinformatics 23 (13), i559-i568, 2007
Dynamic path-based software watermarking
C Collberg, E Carter, S Debray, A Huntwork, J Kececioglu, C Linn, ...
Proceedings of the ACM SIGPLAN 2004 conference on Programming language …, 2004
Exact and approximation algorithms for the inversion distance between two chromosomes
J Kececioglu, D Sankoff
Annual Symposium on Combinatorial Pattern Matching, 87-105, 1993
The maximum weight trace problem in multiple sequence alignment
J Kececioglu
Annual Symposium on Combinatorial Pattern Matching, 106-119, 1993
Of mice and men: Algorithms for evolutionary distances between genomes with translocation
JD Kececiogluy, R Raviz
Symposium on Discrete Algorithms 604, 613, 1995
Efficient bounds for oriented chromosome inversion distance
J Kececioglu, D Sankoff
Annual Symposium on Combinatorial Pattern Matching, 307-325, 1994
A branch-and-cut algorithm for multiple sequence alignment
K Reinert, HP Lenhof, P Mutzel, K Mehlhorn, JD Kececioglu
Proceedings of the first annual international conference on Computational …, 1997
Steiner points in the space of genome rearrangements
D Sankoff, G Sundaram, J Kececioglu
International Journal of Foundations of Computer Science 7 (01), 1-9, 1996
Reconstructing a history of recombinations from a set of sequences
J Kececioglu, D Gusfield
Discrete Applied Mathematics 88 (1-3), 239-260, 1998
Exact and approximation algorithms for DNA sequence reconstruction.
JD Kececioglu
The University of Arizona., 1991
A polyhedral approach to sequence alignment problems
JD Kececioglu, HP Lenhof, K Mehlhorn, P Mutzel, K Reinert, M Vingron
Discrete applied mathematics 104 (1-3), 143-186, 2000
Aligning alignments exactly
J Kececioglu, D Starrett
Proceedings of the eighth annual international conference on Resaerch in …, 2004
HIV-1 Encodes a Sequence Overlappingenv gp41 With Highly Significant Similarity to Selenium-Dependent Glutathione Peroxidases
EW Taylor, A Bhat, RG Nadimpalli, W Zhang, J Kececioglu
JAIDS Journal of Acquired Immune Deficiency Syndromes 15 (5), 393-394, 1997
Accuracy estimation and parameter advising for protein multiple sequence alignment
J Kececioglu, D DeBlasio
Journal of Computational Biology 20 (4), 259-279, 2013
Simple and fast inverse alignment
J Kececioglu, E Kim
Annual International Conference on Research in Computational Molecular …, 2006
Separating repeats in DNA sequence assembly
J Kececioglu, J Yu
Proceedings of the fifth annual international conference on Computational …, 2001
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