| A community effort to assess and improve drug sensitivity prediction algorithms JC Costello, LM Heiser, E Georgii, M Gönen, MP Menden, NJ Wang, ... Nature biotechnology 32 (12), 1202-1212, 2014 | 788 | 2014 |
| Modeling gene regulation from paired expression and chromatin accessibility data Z Duren, X Chen, R Jiang, Y Wang, WH Wong Proceedings of the National Academy of Sciences 114 (25), E4914-E4923, 2017 | 177 | 2017 |
| Integrative analysis of single-cell genomics data by coupled nonnegative matrix factorizations Z Duren, X Chen, M Zamanighomi, W Zeng, AT Satpathy, HY Chang, ... Proceedings of the National Academy of Sciences 115 (30), 7723-7728, 2018 | 165 | 2018 |
| Subspace matching pursuit for sparse unmixing of hyperspectral data Z Shi, W Tang, Z Duren, Z Jiang IEEE Transactions on Geoscience and Remote Sensing 52 (6), 3256-3274, 2013 | 113 | 2013 |
| Unsupervised clustering and epigenetic classification of single cells M Zamanighomi, Z Lin, T Daley, X Chen, Z Duren, A Schep, WJ Greenleaf, ... Nature communications 9 (1), 2410, 2018 | 111 | 2018 |
| TFAP2C-and p63-dependent networks sequentially rearrange chromatin landscapes to drive human epidermal lineage commitment L Li, Y Wang, JL Torkelson, G Shankar, JM Pattison, HH Zhen, F Fang, ... Cell Stem Cell 24 (2), 271-284. e8, 2019 | 83 | 2019 |
| Integrated functional genomic analyses of Klinefelter and Turner syndromes reveal global network effects of altered X chromosome dosage X Zhang, D Hong, S Ma, T Ward, M Ho, R Pattni, Z Duren, A Stankov, ... Proceedings of the National Academy of Sciences 117 (9), 4864-4873, 2020 | 73 | 2020 |
| DC3 is a method for deconvolution and coupled clustering from bulk and single-cell genomics data W Zeng, X Chen, Z Duren, Y Wang, R Jiang, WH Wong Nature communications 10 (1), 4613, 2019 | 69 | 2019 |
| Chromatin accessibility landscape and regulatory network of high-altitude hypoxia adaptation J Xin, H Zhang, Y He, Z Duren, C Bai, L Chen, X Luo, DS Yan, C Zhang, ... Nature communications 11 (1), 4928, 2020 | 58 | 2020 |
| Dynamic chromatin regulatory landscape of human CAR T cell exhaustion DG Gennert, RC Lynn, JM Granja, EW Weber, MR Mumbach, Y Zhao, ... Proceedings of the National Academy of Sciences 118 (30), e2104758118, 2021 | 49 | 2021 |
| Time course regulatory analysis based on paired expression and chromatin accessibility data Z Duren, X Chen, J Xin, Y Wang, WH Wong Genome research 30 (4), 622-634, 2020 | 43 | 2020 |
| Sparse hyperspectral unmixing using an approximate L0 norm W Tang, Z Shi, Z Duren Optik 125 (1), 31-38, 2014 | 30 | 2014 |
| Modeling regulatory network topology improves genome-wide analyses of complex human traits X Zhu, Z Duren, WH Wong Nature communications 12 (1), 2851, 2021 | 28 | 2021 |
| Regulatory analysis of single cell multiome gene expression and chromatin accessibility data with scREG Z Duren, F Chang, F Naqing, J Xin, Q Liu, WH Wong Genome biology 23 (1), 114, 2022 | 27 | 2022 |
| Sc-compReg enables the comparison of gene regulatory networks between conditions using single-cell data Z Duren, WS Lu, JG Arthur, P Shah, J Xin, F Meschi, ML Li, CM Nemec, ... Nature Communications 12 (1), 4763, 2021 | 22 | 2021 |
| A method for scoring the cell type-specific impacts of noncoding variants in personal genomes W Li, Z Duren, R Jiang, WH Wong Proceedings of the National Academy of Sciences 117 (35), 21364-21372, 2020 | 15 | 2020 |
| Clinical data analysis reveals three subytpes of gastric cancer X Wang, Z Duren, C Zhang, L Chen, Y Wang 2012 IEEE 6th International Conference on Systems Biology (ISB), 315-320, 2012 | 11 | 2012 |
| Inferring gene regulatory networks from single-cell multiome data using atlas-scale external data Q Yuan, Z Duren Nature Biotechnology, 1-11, 2024 | 10 | 2024 |
| Human genetic variants associated with COVID-19 severity are enriched in immune and epithelium regulatory networks Z Feng, X Ren, Z Duren, Y Wang Phenomics 2 (6), 389-403, 2022 | 10 | 2022 |
| A systematic method to identify modulation of transcriptional regulation via chromatin activity reveals regulatory network during mESC differentiation Z Duren, Y Wang Scientific reports 6 (1), 22656, 2016 | 10 | 2016 |
Yong WangAcademy of Mathematics and Systems Science, Chinese Academy of SciencesVerified email at amss.ac.cn
