Raluca Gordan
Raluca Gordan
Associate Professor, Duke University
Verified email at duke.edu - Homepage
Title
Cited by
Cited by
Year
Absence of a simple code: how transcription factors read the genome
M Slattery, T Zhou, L Yang, ACD Machado, R Gordân, R Rohs
Trends in biochemical sciences 39 (9), 381-399, 2014
3442014
Drosophila ORC localizes to open chromatin and marks sites of cohesin complex loading
HK MacAlpine, R Gordân, SK Powell, AJ Hartemink, DM MacAlpine
Genome research 20 (2), 201-211, 2010
2702010
Genomic regions flanking E-box binding sites influence DNA binding specificity of bHLH transcription factors through DNA shape
R Gordân, N Shen, I Dror, T Zhou, J Horton, R Rohs, ML Bulyk
Cell reports 3 (4), 1093-1104, 2013
2322013
Whole-genome and epigenomic landscapes of etiologically distinct subtypes of cholangiocarcinoma
A Jusakul, I Cutcutache, CH Yong, JQ Lim, MN Huang, N Padmanabhan, ...
Cancer discovery 7 (10), 1116-1135, 2017
2122017
Protein–DNA binding: complexities and multi-protein codes
T Siggers, R Gordaˆn
Nucleic acids research 42 (4), 2099-2111, 2014
1642014
Quantitative modeling of transcription factor binding specificities using DNA shape
T Zhou, N Shen, L Yang, N Abe, J Horton, RS Mann, HJ Bussemaker, ...
Proceedings of the National Academy of Sciences 112 (15), 4654-4659, 2015
1622015
Distinguishing direct versus indirect transcription factor–DNA interactions
R Gordân, AJ Hartemink, ML Bulyk
Genome research 19 (11), 2090-2100, 2009
1412009
Distinguishing direct versus indirect transcription factor–DNA interactions
R Gordân, AJ Hartemink, ML Bulyk
Genome research 19 (11), 2090-2100, 2009
1402009
Human-chimpanzee differences in a FZD8 enhancer alter cell-cycle dynamics in the developing neocortex
JL Boyd, SL Skove, JP Rouanet, LJ Pilaz, T Bepler, R Gordân, GA Wray, ...
Current Biology 25 (6), 772-779, 2015
1352015
A nucleosome-guided map of transcription factor binding sites in yeast
L Narlikar, R Gordân, AJ Hartemink
PLoS Comput Biol 3 (11), e215, 2007
1202007
TFBSshape: a motif database for DNA shape features of transcription factor binding sites
L Yang, T Zhou, I Dror, A Mathelier, WW Wasserman, R Gordân, R Rohs
Nucleic acids research 42 (D1), D148-D155, 2014
1082014
Curated collection of yeast transcription factor DNA binding specificity data reveals novel structural and gene regulatory insights
R Gordân, KF Murphy, RP McCord, C Zhu, A Vedenko, ML Bulyk
Genome biology 12 (12), R125, 2011
1022011
Survey of variation in human transcription factors reveals prevalent DNA binding changes
LA Barrera, A Vedenko, JV Kurland, JM Rogers, SS Gisselbrecht, ...
Science 351 (6280), 1450-1454, 2016
982016
Informative priors based on transcription factor structural class improve de novo motif discovery
L Narlikar, R Gordân, U Ohler, AJ Hartemink
Bioinformatics 22 (14), e384-e392, 2006
772006
Protein− DNA binding in the absence of specific base-pair recognition
A Afek, JL Schipper, J Horton, R Gordân, DB Lukatsky
Proceedings of the National Academy of Sciences 111 (48), 17140-17145, 2014
752014
Stability selection for regression-based models of transcription factor–DNA binding specificity
F Mordelet, J Horton, AJ Hartemink, BE Engelhardt, R Gordân
Bioinformatics 29 (13), i117-i125, 2013
602013
Finding regulatory DNA motifs using alignment-free evolutionary conservation information
R Gordaˆn, L Narlikar, AJ Hartemink
Nucleic Acids Research 38 (6), e90-e90, 2010
522010
Nucleosome occupancy information improves de novo motif discovery
L Narlikar, R Gordân, AJ Hartemink
Annual International Conference on Research in Computational Molecular …, 2007
442007
Establishment of Expression in the SHORTROOT-SCARECROW Transcriptional Cascade through Opposing Activities of Both Activators and Repressors
EE Sparks, C Drapek, A Gaudinier, S Li, M Ansariola, N Shen, ...
Developmental cell 39 (5), 585-596, 2016
432016
Sequence specificity incompletely defines the genome-wide occupancy of Myc
J Guo, T Li, J Schipper, KA Nilson, FK Fordjour, JJ Cooper, R Gordân, ...
Genome biology 15 (10), 482, 2014
422014
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