| Fast and scalable inference of multi-sample cancer lineages V Popic, R Salari, I Hajirasouliha, D Kashef-Haghighi, RB West, ... Genome biology 16, 1-17, 2015 | 217 | 2015 |
| Short read alignment with populations of genomes L Huang, V Popic, S Batzoglou Bioinformatics 29 (13), i361-i370, 2013 | 146 | 2013 |
| Abstractions for Usable Information Flow Control in Aeolus. W Cheng, DRK Ports, DA Schultz, V Popic, A Blankstein, JA Cowling, ... USENIX Annual Technical Conference, 139-151, 2012 | 114 | 2012 |
| Composition and reuse with compiled domain-specific languages AK Sujeeth, T Rompf, KJ Brown, HJ Lee, H Chafi, V Popic, M Wu, ... ECOOP 2013–Object-Oriented Programming: 27th European Conference …, 2013 | 87 | 2013 |
| A hybrid cloud read aligner based on MinHash and kmer voting that preserves privacy V Popic, S Batzoglou Nature communications 8 (1), 15311, 2017 | 39 | 2017 |
| High-throughput RNA isoform sequencing using programmable cDNA concatenation AM Al’Khafaji, JT Smith, KV Garimella, M Babadi, M Sade-Feldman, ... Biorxiv, 2021.10. 01.462818, 2021 | 18 | 2021 |
| Privacy-preserving read mapping using locality sensitive hashing and secure kmer voting V Popic, S Batzoglou bioRxiv, 046920, 2016 | 12 | 2016 |
| Fast metagenomic binning via hashing and bayesian clustering V Popic, V Kuleshov, M Snyder, S Batzoglou Journal of Computational Biology 25 (7), 677-688, 2018 | 9 | 2018 |
| Meltos: multi-sample tumor phylogeny reconstruction for structural variants C Ricketts, D Seidman, V Popic, F Hormozdiari, S Batzoglou, ... Bioinformatics 36 (4), 1082-1090, 2020 | 8 | 2020 |
| Using LICHeE and BAMSE for reconstructing cancer phylogenetic trees C Ricketts, V Popic, H Toosi, I Hajirasouliha Current protocols in bioinformatics 62 (1), e49, 2018 | 7 | 2018 |
| GATTACA: Lightweight Metagenomic Binning Using Kmer Counting V Popic, V Kuleshov, M Snyder Research in Computational Molecular Biology, 391, 2017 | 6* | 2017 |
| DNA sequencing using hydrogel beads YS Wu, F Gorpe-Yasar, TK Khurana, V Popic, EB Jaeger, M Ronaghi US Patent 11,180,752, 2021 | 5 | 2021 |
| Audit trails in the Aeolus distributed security platform V Popic | 5 | 2010 |
| Parallizing the push-relabel max flow algorithm V Popic, J Vélez | 3 | 2010 |
| Cue: a deep-learning framework for structural variant discovery and genotyping V Popic, C Rohlicek, F Cunial, I Hajirasouliha, D Meleshko, K Garimella, ... Nature Methods, 1-10, 2023 | 2 | 2023 |
| Spatial indexing of genetic material and library preparation using hydrogel beads and flow cells TK Khurana, YS Wu, XJ Chen, F Gorpe-Yasar, YY Lin, V Popic, EB Jaeger, ... US Patent 11,352,668, 2022 | 1 | 2022 |
| Spatial indexing of genetic material and library preparation using hydrogel beads and flow cells TK Khurana, YS Wu, XJ Chen, F Gorpe-Yasar, YY Lin, V Popic, EB Jaeger, ... US Patent 11,649,498, 2023 | | 2023 |
| Developing bioinformatics capacity in Moldova V Munteanu, D Ciorbă, S Mangul Electronics, Communications and Computing, 22-23, 2023 | | 2023 |
| Dna sequencing using hydrogel beads YS Wu, F Gorpe-Yasar, TK Khurana, V Popic, EB Jaeger, M Ronaghi US Patent App. 17/451,771, 2022 | | 2022 |
| Addressing the DNA Deluge: Algorithmic Methods for Large-Scale Genome Analysis V Popic Stanford University, 2017 | | 2017 |
