Pavel Zhuravlev
Pavel Zhuravlev
Postdoctoral researcher
Verified email at umd.edu
TitleCited byYear
Protein functional landscapes, dynamics, allostery: a tortuous path towards a universal theoretical framework
PI Zhuravlev, GA Papoian
Quarterly reviews of biophysics 43 (3), 295-332, 2010
1272010
Molecular noise of capping protein binding induces macroscopic instability in filopodial dynamics
PI Zhuravlev, GA Papoian
Proceedings of the National Academy of Sciences 106 (28), 11570-11575, 2009
702009
Deconstructing the native state: energy landscapes, function, and dynamics of globular proteins
PI Zhuravlev, CK Materese, GA Papoian
The Journal of Physical Chemistry B 113 (26), 8800-8812, 2009
642009
Functional versus folding landscapes: the same yet different
PI Zhuravlev, GA Papoian
Current opinion in structural biology 20 (1), 16-22, 2010
382010
Propensity to form amyloid fibrils is encoded as excitations in the free energy landscape of monomeric proteins
PI Zhuravlev, G Reddy, JE Straub, D Thirumalai
Journal of molecular biology 426 (14), 2653-2666, 2014
362014
Force-dependent switch in protein unfolding pathways and transition state movements
PI Zhuravlev, M Hinczewski, S Chakrabarti, S Marqusee, D Thirumalai
Proceedings of the National Academy of Sciences 113 (6), E715–E724, 2016
322016
Theory of active transport in filopodia and stereocilia
PI Zhuravlev, Y Lan, MS Minakova, GA Papoian
Proceedings of the National Academy of Sciences 109 (27), 10849-10854, 2012
322012
Design of active transport must be highly intricate: a possible role of myosin and Ena/VASP for G-actin transport in filopodia
PI Zhuravlev, BS Der, GA Papoian
Biophysical journal 98 (8), 1439-1448, 2010
252010
Computing free energy of a large-scale allosteric transition in adenylate kinase using all atom explicit solvent simulations
DA Potoyan, PI Zhuravlev, GA Papoian
The Journal of Physical Chemistry B 116 (5), 1709-1715, 2012
212012
High resolution approach to the native state ensemble kinetics and thermodynamics
S Wu, PI Zhuravlev, GA Papoian
Biophysical journal 95 (12), 5524-5532, 2008
202008
Protein collapse is encoded in the folded state architecture
HS Samanta, PI Zhuravlev, M Hinczewski, N Hori, S Chakrabarti, ...
Soft Matter 13 (19), 3622-3638, 2017
152017
Computing free energies of protein conformations from explicit solvent simulations
PI Zhuravlev, S Wu, DA Potoyan, M Rubinstein, GA Papoian
Methods 52 (1), 115-121, 2010
142010
Protein fluxes along the filopodium as a framework for understanding the growth-retraction dynamics: the interplay between diffusion and active transport
PI Zhuravlev, GA Papoian
Cell adhesion & migration 5 (5), 448-456, 2011
132011
Symmetry, rigidity, and allosteric signaling: From monomeric proteins to molecular machines
D Thirumalai, C Hyeon, PI Zhuravlev, GH Lorimer
Chemical reviews 119 (12), 6788-6821, 2019
52019
Reply to Alberti: Are in vitro folding experiments relevant in vivo?
PI Zhuravlev, M Hinczewski, S Chakrabarti, S Marqusee, D Thirumalai
Proceedings of the National Academy of Sciences 113 (23), E3192-E3192, 2016
2016
Computer Simulations of Mechano-Chemical Networks Choreographing Actin Dynamics in Cell Motility
PI Zhuravlev, L Hu, GA Papoian
Computational Modeling of Biological Systems, 231-256, 2012
2012
Rigorous Calculation of Free Energy Difference Between Open and Closed States of Adenylate Kinase from Explicit Solvent Molecular Dynamics
PI Zhuravlev, DA Potoyan, M Rubinstein, GA Papoian
Biophysical Journal 100 (3), 378a, 2011
2011
Myosin Motor Dynamics in Filopodia
PI Zhuravlev, M Minakova, Y Lan, GA Papoian
Biophysical Journal 100 (3), 596a, 2011
2011
Unraveling the complexity of biological processes from protein native dynamics to cell motility
PI Zhuravlev
2010
Nck Function in Tyrosine Kinase Signaling to the Actin Cytoskeleton
JA Ditlev, S Borinskaya, GM Rivera, NM Vacanti, IL Novak, LM Loew, ...
Biophysical Journal 98 (3), 560a, 2010
2010
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Articles 1–20