Mahmut Uludag

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Rodrigo LopezHead of Web Production. EMBL-EBI (Retired August 2022)Verified email at ebi.ac.uk
Hamish McWilliamRobert Gordon UniversityVerified email at bioinfo-user.org.uk
Silvano SquizzatoEuropean Bioinformatics Institute (EMBL-EBI)Verified email at ebi.ac.uk
Weizhong LiZhongshan School of Medicine, Sun Yat-sen UniversityVerified email at mail.sysu.edu.cn
Christophe Van NesteBiodiversity Informatician, Meise Botanical GardenVerified email at plantentuinmeise.be
Arturo Magana-MoraLead Data Scientist, Saudi AramcoVerified email at kaust.edu.sa
Dr. Arwa RaiesSenior Data Scientist at Center for Genomics Research (CGR) at AstraZenecaVerified email at astrazeneca.com
Mehmet Resit TolunProfessor @ Cankaya UniversityVerified email at cankaya.edu.tr
Matúš KalašSenior Engineer / Infrastructure Scientist, Department of Informatics, University of BergenVerified email at uib.no
Stephen PettiferReader, School of Computer Science, The University of ManchesterVerified email at manchester.ac.uk
Inge JonassenProfessor, Head of Department of Informatics, University of BergenVerified email at uib.no
James MaloneCTO, BenevolentAIVerified email at benevolent.ai
Dan BolserFree ManVerified email at ebi.ac.uk
Hayri Sever, Ph.D.Professor of Computer Engineering, Cankaya UniversityVerified email at cankaya.edu.tr
Saleh Abu-SoudPrincess Sumaya University for TechnologyVerified email at psut.edu.jo
Haitham AshoorPrincipal Scientist at TakedaVerified email at kaust.edu.sa
Tanvir Alam, PhDHamad bin Khalifa University, Doha, QatarVerified email at hbku.edu.qa
Aleksandar RadovanovicQuantum Computing Institute, Cape Town, South AfricaVerified email at radovanovic.com
Rozaimi Razali, PhDQatar UniversityVerified email at qu.edu.qa
Ameerah BokhariPh.D. in BioscienceVerified email at kaust.edu.sa

Mahmut Uludag

Software Developer, King Abdullah University of Science and Technology

Verified email at kaust.edu.sa - Homepage

bioinformatics data integration


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Analysis tool web services from the EMBL-EBI H McWilliam, W Li, M Uludag, S Squizzato, YM Park, N Buso, AP Cowley, ... Nucleic acids research 41 (W1), W597-W600, 2013	2075	2013
The EMBL-EBI bioinformatics web and programmatic tools framework W Li, A Cowley, M Uludag, T Gur, H McWilliam, S Squizzato, YM Park, ... Nucleic acids research 43 (W1), W580-W584, 2015	1198	2015
EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats J Ison, M Kalaš, I Jonassen, D Bolser, M Uludag, H McWilliam, J Malone, ... Bioinformatics 29 (10), 1325-1332, 2013	302	2013
Sequenceserver: a modern graphical user interface for custom BLAST databases A Priyam, BJ Woodcroft, V Rai, I Moghul, A Munagala, F Ter, ... Molecular biology and evolution 36 (12), 2922-2924, 2019	264	2019
A simplified model for radiant heating and cooling panels IB Kilkis, SS Sager, M Uludag Simulation Practice and Theory 2 (2), 61-76, 1994	98	1994
Splice2Deep: An ensemble of deep convolutional neural networks for improved splice site prediction in genomic DNA S Albaradei, A Magana-Mora, M Thafar, M Uludag, VB Bajic, T Gojobori, ... Gene 763, 100035, 2020	53	2020
The EBI Search engine: providing search and retrieval functionality for biological data from EMBL-EBI S Squizzato, YM Park, N Buso, T Gur, A Cowley, W Li, M Uludag, S Pundir, ... Nucleic acids research 43 (W1), W585-W588, 2015	48	2015
The EMBRACE web service collection S Pettifer, J Ison, M Kalaš, D Thorne, P McDermott, I Jonassen, A Liaquat, ... Nucleic acids research 38 (suppl_2), W683-W688, 2010	47	2010
Ila-2: An inductive learning algorithm for knowledge discovery MR Tolun, H Sever, M Uludag, SM Abu-Soud Cybernetics & Systems 30 (7), 609-628, 1999	44	1999
FARNA: knowledgebase of inferred functions of non-coding RNA transcripts T Alam, M Uludag, M Essack, A Salhi, H Ashoor, JB Hanks, C Kapfer, ... Nucleic acids research 45 (5), 2838-2848, 2017	39	2017
Hybrid model for efficient prediction of poly (A) signals in human genomic DNA F Albalawi, A Chahid, X Guo, S Albaradei, A Magana-Mora, BR Jankovic, ... Methods 166, 31-39, 2019	23	2019
Soaplab2: more reliable Sesame door to bioinformatics programs M Senger, P Rice, A Bleasby, T Oinn, M Uludag Bioinformatics Open Source Conference, BOSC 8, 2008	19	2008
DES-mutation: system for exploring links of mutations and diseases V Kordopati, A Salhi, R Razali, A Radovanovic, F Tifratene, M Uludag, ... Scientific reports 8 (1), 13359, 2018	16	2018
Improved rule discovery performance on uncertainty M Tolun, H Sever, M Uludağ Research and Development in Knowledge Discovery and Data Mining, 310-321, 1998	15	1998
Predicting bone metastasis using gene expression-based machine learning models S Albaradei, M Uludag, MA Thafar, T Gojobori, M Essack, X Gao Frontiers in Genetics 12, 771092, 2021	13	2021
Automated counting of colony forming units using deep transfer learning from a model for congested scenes analysis SA Albaradei, F Napolitano, M Uludag, M Thafar, S Napolitano, M Essack, ... IEEE Access 8, 164340-164346, 2020	12	2020
PATH^cre8: A Tool That Facilitates the Searching for Heterologous Biosynthetic Routes O Motwalli, M Uludag, I Mijakovic, M Alazmi, VB Bajic, T Gojobori, X Gao, ... ACS synthetic biology 9 (12), 3217-3227, 2020	10	2020
Combining biomedical knowledge graphs and text to improve predictions for drug-target interactions and drug-indications M Alshahrani, A Almansour, A Alkhaldi, MA Thafar, M Uludag, M Essack, ... PeerJ 10, e13061, 2022	9	2022
Soaplab: open source web services framework for Bioinformatics programs M Senger, P Rice, A Bleasby, M Uludag The 10th Annual Bioinformatics Open Source Conference. Satellite Workshop of …, 2009	9	2009
A multi-relational rule discovery system M Uludağ, M Tolun, T Etzold Computer and Information Sciences-ISCIS 2003, 252-259, 2003	8	2003

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