Olga Vitek
Olga Vitek
Professor, Khoury College of Computer Sciences, Northeastern University
Verified email at - Homepage
Cited by
Cited by
SuperHirn – a novel tool for high resolution LC‐MS‐based peptide/protein profiling
LN Mueller, O Rinner, A Schmidt, S Letarte, B Bodenmiller, MY Brusniak, ...
Proteomics 7 (19), 3470-3480, 2007
Analysis and validation of proteomic data generated by tandem mass spectrometry
AI Nesvizhskii, O Vitek, R Aebersold
Nature methods 4 (10), 787-797, 2007
MSstats: an R package for statistical analysis of quantitative mass spectrometry-based proteomic experiments
M Choi, CY Chang, T Clough, D Broudy, T Killeen, B MacLean, O Vitek
Bioinformatics 30 (17), 2524-2526, 2014
Extending the limits of quantitative proteome profiling with data-independent acquisition and application to acetaminophen-treated three-dimensional liver microtissues*[s]
R Bruderer, OM Bernhardt, T Gandhi, SM Miladinović, LY Cheng, ...
Molecular & Cellular Proteomics 14 (5), 1400-1410, 2015
Targeted peptide measurements in biology and medicine: best practices for mass spectrometry-based assay development using a fit-for-purpose approach
SA Carr, SE Abbatiello, BL Ackermann, C Borchers, B Domon, ...
Molecular & Cellular Proteomics 13 (3), 907-917, 2014
A Coastal Cline in Sodium Accumulation in Arabidopsis thaliana Is Driven by Natural Variation of the Sodium Transporter AtHKT1;1
I Baxter, JN Brazelton, D Yu, YS Huang, B Lahner, E Yakubova, Y Li, ...
PLoS genetics 6 (11), e1001193, 2010
Phosphoproteomic analysis reveals interconnected system-wide responses to perturbations of kinases and phosphatases in yeast
B Bodenmiller, S Wanka, C Kraft, J Urban, D Campbell, PG Pedrioli, ...
Science signaling 3 (153), rs4-rs4, 2010
Quantitative variability of 342 plasma proteins in a human twin population
Y Liu, A Buil, BC Collins, LCJ Gillet, LC Blum, LY Cheng, O Vitek, ...
Molecular systems biology 11 (2), 786, 2015
The leaf ionome as a multivariable system to detect a plant's physiological status
IR Baxter, O Vitek, B Lahner, B Muthukumar, M Borghi, J Morrissey, ...
Proceedings of the National Academy of Sciences 105 (33), 12081-12086, 2008
Statistical design of quantitative mass spectrometry-based proteomic experiments
AL Oberg, O Vitek
Journal of proteome research 8 (5), 2144-2156, 2009
Cardinal: an R package for statistical analysis of mass spectrometry-based imaging experiments
KD Bemis, A Harry, LS Eberlin, C Ferreira, SM van de Ven, P Mallick, ...
Bioinformatics 31 (14), 2418-2420, 2015
Reproducible and consistent quantification of the Saccharomyces cerevisiae proteome by SWATH-mass spectrometry
N Selevsek, CY Chang, LC Gillet, P Navarro, OM Bernhardt, L Reiter, ...
Molecular & Cellular Proteomics 14 (3), 739-749, 2015
Multivariate statistical differentiation of renal cell carcinomas based on lipidomic analysis by ambient ionization imaging mass spectrometry
AL Dill, LS Eberlin, C Zheng, AB Costa, DR Ifa, L Cheng, TA Masterson, ...
Analytical and bioanalytical chemistry 398, 2969-2978, 2010
Protein significance analysis in selected reaction monitoring (SRM) measurements
CY Chang, P Picotti, R Hüttenhain, V Heinzelmann-Schwarz, M Jovanovic, ...
Molecular & Cellular Proteomics 11 (4), 2012
Dietary patterns in six European populations: results from EURALIM, a collaborative European data harmonization and information campaign
S Beer-Borst, S Hercberg, A Morabia, MS Bernstein, P Galan, R Galasso, ...
European journal of clinical nutrition 54 (3), 253-262, 2000
Statistical protein quantification and significance analysis in label-free LC-MS experiments with complex designs
T Clough, S Thaminy, S Ragg, R Aebersold, O Vitek
BMC bioinformatics 13 (16), 1-17, 2012
Multivariate statistical identification of human bladder carcinomas using ambient ionization imaging mass spectrometry
AL Dill, LS Eberlin, AB Costa, C Zheng, DR Ifa, L Cheng, TA Masterson, ...
Chemistry–A European Journal 17 (10), 2897-2902, 2011
Shrinkage estimation of dispersion in Negative Binomial models for RNA-seq experiments with small sample size
D Yu, W Huber, O Vitek
Bioinformatics 29 (10), 1275-1282, 2013
Protein quantification in label-free LC-MS experiments
T Clough, M Key, I Ott, S Ragg, G Schadow, O Vitek
Journal of proteome research 8 (11), 5275-5284, 2009
A statistical model-building perspective to identification of MS/MS spectra with PeptideProphet
K Ma, O Vitek, AI Nesvizhskii
BMC bioinformatics 13 (16), 1-17, 2012
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