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Ritambhara Singh
Ritambhara Singh
Assistant Professor, Brown University
Verified email at brown.edu - Homepage
Title
Cited by
Cited by
Year
Genome-wide analysis reveals characteristics of off-target sites bound by the Cas9 endonuclease
C Kuscu, S Arslan, R Singh, J Thorpe, M Adli
Nature biotechnology 32 (7), 677-683, 2014
9032014
DeepChrome: deep-learning for predicting gene expression from histone modifications
R Singh, J Lanchantin, G Robins, Y Qi
Bioinformatics 32 (17), i639-i648, 2016
2742016
Cas9-chromatin binding information enables more accurate CRISPR off-target prediction
R Singh, C Kuscu, A Quinlan, Y Qi, M Adli
Nucleic acids research 43 (18), e118-e118, 2015
2192015
Live cell imaging of low-and non-repetitive chromosome loci using CRISPR-Cas9
P Qin, M Parlak, C Kuscu, J Bandaria, M Mir, K Szlachta, R Singh, ...
Nature communications 8 (1), 14725, 2017
2162017
Deep motif dashboard: visualizing and understanding genomic sequences using deep neural networks
J Lanchantin, R Singh, B Wang, Y Qi
Pacific Symposium on Biocomputing 2017, 254-265, 2017
1522017
Degree of recruitment of DOT1L to MLL-AF9 defines level of H3K79 Di-and tri-methylation on target genes and transformation potential
A Kuntimaddi, NJ Achille, J Thorpe, AA Lokken, R Singh, CS Hemenway, ...
Cell reports 11 (5), 808-820, 2015
1082015
Jointly embedding multiple single-cell omics measurements
J Liu, Y Huang, R Singh, JP Vert, WS Noble
Algorithms in bioinformatics:... International Workshop, WABIá…, 2019
1012019
Deep motif: Visualizing genomic sequence classifications
J Lanchantin, R Singh, Z Lin, Y Qi
arXiv preprint arXiv:1605.01133, 2016
952016
Discovery of CTCF-sensitive Cis-spliced fusion RNAs between adjacent genes in human prostate cells
F Qin, Z Song, M Babiceanu, Y Song, L Facemire, R Singh, M Adli, H Li
PLoS genetics 11 (2), e1005001, 2015
862015
Gromov-Wasserstein optimal transport to align single-cell multi-omics data
P Demetci, R Santorella, B Sandstede, WS Noble, R Singh
BioRxiv, 2020.04. 28.066787, 2020
782020
Attend and predict: Understanding gene regulation by selective attention on chromatin
R Singh, J Lanchantin, A Sekhon, Y Qi
Advances in neural information processing systems 30, 2017
762017
DeepDiff: DEEP-learning for predicting DIFFerential gene expression from histone modifications
A Sekhon, R Singh, Y Qi
Bioinformatics 34 (17), i891-i900, 2018
522018
Unsupervised manifold alignment for single-cell multi-omics data
R Singh, P Demetci, G Bonora, V Ramani, C Lee, H Fang, Z Duan, ...
Proceedings of the 11th ACM International Conference on Bioinformaticsá…, 2020
482020
SCOT: single-cell multi-omics alignment with optimal transport
P Demetci, R Santorella, B Sandstede, WS Noble, R Singh
Journal of Computational Biology 29 (1), 3-18, 2022
452022
A pitfall for machine learning methods aiming to predict across cell types
J Schreiber, R Singh, J Bilmes, WS Noble
Genome biology 21 (1), 1-6, 2020
422020
An automated COVID-19 triage pipeline using artificial intelligence based on chest radiographs and clinical data
CK Kim, JW Choi, Z Jiao, D Wang, J Wu, TY Yi, KC Halsey, F Eweje, ...
NPJ Digital Medicine 5 (1), 5, 2022
262022
GaKCo: A Fast Gapped k-mer String Kernel Using Counting
R Singh, A Sekhon, K Kowsari, J Lanchantin, B Wang, Y Qi
Joint European Conference on Machine Learning and Knowledge Discovery iná…, 2017
262017
A pan-tissue DNA-methylation epigenetic clock based on deep learning
LP de Lima Camillo, LR Lapierre, R Singh
npj Aging 8 (1), 4, 2022
232022
Unsupervised integration of single-cell multi-omics datasets with disproportionate cell-type representation
P Demetši, R Santorella, B Sandstede, R Singh
International Conference on Research in Computational Molecular Biology, 3-19, 2022
19*2022
Single-cell landscape of nuclear configuration and gene expression during stem cell differentiation and X inactivation
G Bonora, V Ramani, R Singh, H Fang, DL Jackson, S Srivatsan, R Qiu, ...
Genome Biology 22 (1), 1-36, 2021
162021
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