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| An expanded evaluation of protein function prediction methods shows an improvement in accuracy Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ... Genome biology 17 (1), 1-19, 2016 | 401 | 2016 |
| The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ... Genome biology 20 (1), 1-23, 2019 | 314 | 2019 |
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| Development and large scale benchmark testing of the PROSPECTOR_3 threading algorithm J Skolnick, D Kihara, Y Zhang Proteins: Structure, Function, and Bioinformatics 56 (3), 502-518, 2004 | 209 | 2004 |
| Protein-protein docking using region-based 3D Zernike descriptors V Venkatraman, YD Yang, L Sael, D Kihara BMC bioinformatics 10, 1-21, 2009 | 193 | 2009 |
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| TOUCHSTONE: An ab initio protein structure prediction method that uses threading-based tertiary restraints D Kihara, H Lu, A Kolinski, J Skolnick Proceedings of the National Academy of Sciences 98 (18), 10125-10130, 2001 | 179 | 2001 |
| Enhanced automated function prediction using distantly related sequences and contextual association by PFP T Hawkins, S Luban, D Kihara Protein Science 15 (6), 1550-1556, 2006 | 170 | 2006 |
| Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: a CASP‐CAPRI experiment MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ... Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016 | 160 | 2016 |
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| Structure and inhibition of EV-D68, a virus that causes respiratory illness in children Y Liu, J Sheng, A Fokine, G Meng, WH Shin, F Long, RJ Kuhn, D Kihara, ... Science 347 (6217), 71-74, 2015 | 153 | 2015 |
| PFP: Automated prediction of gene ontology functional annotations with confidence scores using protein sequence data T Hawkins, M Chitale, S Luban, D Kihara Proteins: Structure, Function, and Bioinformatics 74 (3), 566-582, 2009 | 153 | 2009 |
| Defrosting the frozen approximation: PROSPECTOR—a new approach to threading J Skolnick, D Kihara Proteins: structure, function, and bioinformatics 42 (3), 319-331, 2001 | 153 | 2001 |
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| The PDB is a covering set of small protein structures D Kihara, J Skolnick Journal of molecular biology 334 (4), 793-802, 2003 | 144 | 2003 |
| Function prediction of uncharacterized proteins T Hawkins, D Kihara Journal of bioinformatics and computational biology 5 (01), 1-30, 2007 | 129 | 2007 |
| The effect of long‐range interactions on the secondary structure formation of proteins D Kihara Protein Science 14 (8), 1955-1963, 2005 | 119 | 2005 |
| Potential for protein surface shape analysis using spherical harmonics and 3D Zernike descriptors V Venkatraman, L Sael, D Kihara Cell biochemistry and biophysics 54, 23-32, 2009 | 112 | 2009 |
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Genki TerashiAssistant research scientist, Department of Biological Sciences, Purdue UniversityVerified email at purdue.edu
