| CAVER Analyst 2.0: analysis and visualization of channels and tunnels in protein structures and molecular dynamics trajectories A Jurcik, D Bednar, J Byska, SM Marques, K Furmanova, L Daniel, ... Bioinformatics 34 (20), 3586-3588, 2018 | 313 | 2018 |
| MoleCollar and tunnel heat map visualizations for conveying spatio‐temporo‐chemical properties across and along protein voids J Byška, A Jurčík, ME Gröller, I Viola, B Kozlikova Computer Graphics Forum 34 (3), 1-10, 2015 | 35* | 2015 |
| AnimoAminoMiner: Exploration of protein tunnels and their properties in molecular dynamics J Byška, M Le Muzic, ME Gröller, I Viola, B Kozlikova IEEE transactions on visualization and computer graphics 22 (1), 747-756, 2015 | 34 | 2015 |
| VRdeo: Creating engaging educational material for asynchronous student-teacher exchange using virtual reality V Brůža, J Byška, J Mičan, B Kozlíková Computers & Graphics 98, 280-292, 2021 | 29 | 2021 |
| Analysis of long molecular dynamics simulations using interactive focus+ context visualization J Byška, T Trautner, SM Marques, J Damborský, B Kozlíková, M Waldner Computer Graphics Forum 38 (3), 441-453, 2019 | 27 | 2019 |
| Interactive exploration of ligand transportation through protein tunnels K Furmanová, M Jarešová, J Byška, A Jurčík, J Parulek, H Hauser, ... BMC bioinformatics 18, 1-16, 2017 | 25 | 2017 |
| Comparative visualization of protein secondary structures L Kocincová, M Jarešová, J Byška, J Parulek, H Hauser, B Kozlíková BMC bioinformatics 18, 1-12, 2017 | 24 | 2017 |
| State of the art of molecular visualization in immersive virtual environments D Kuťák, P Vázquez, T Isenberg, M Krone, M Baaden, J Byška, ... Computer Graphics Forum 42 (6), e14738, 2023 | 22 | 2023 |
| Watergate: Visual Exploration of Water Trajectories in Protein Dynamics. V Vad, J Byska, A Jurcík, I Viola, ME Gröller, H Hauser, SM Marques, ... Vcbm, 33-42, 2017 | 21 | 2017 |
| ChemVA: interactive visual analysis of chemical compound similarity in virtual screening MV Sabando, P Ulbrich, M Selzer, J Byška, J Mičan, I Ponzoni, AJ Soto, ... IEEE Transactions on Visualization and Computer Graphics 27 (2), 891-901, 2020 | 20 | 2020 |
| COZOID: contact zone identifier for visual analysis of protein-protein interactions K Furmanová, J Byška, EM Gröller, I Viola, JJ Paleček, B Kozlíková BMC bioinformatics 19, 1-17, 2018 | 20 | 2018 |
| Vivern–a virtual environment for multiscale visualization and modeling of DNA nanostructures D Kuťák, MN Selzer, J Byška, ML Ganuza, I Barišić, B Kozlíková, H Miao IEEE Transactions on Visualization and Computer Graphics 28 (12), 4825-4838, 2021 | 18 | 2021 |
| LoopGrafter: a web tool for transplanting dynamical loops for protein engineering J Planas-Iglesias, F Opaleny, P Ulbrich, J Stourac, Z Sanusi, GP Pinto, ... Nucleic Acids Research 50 (W1), W465-W473, 2022 | 17 | 2022 |
| Visibility-based approach to surface detection of tunnels in proteins A Jurčík, J Byška, J Sochor, B Kozlíková Proceedings of the 31st Spring Conference on Computer Graphics, 65-72, 2015 | 11 | 2015 |
| Dynamics-function relationship in the catalytic domains of N-terminal acetyltransferases A Abboud, P Bédoucha, J Byška, T Arnesen, N Reuter Computational and Structural Biotechnology Journal 18, 532-547, 2020 | 10 | 2020 |
| Scale-space splatting: Reforming spacetime for cross-scale exploration of integral measures in molecular dynamics J Pálenik, J Byška, S Bruckner, H Hauser IEEE transactions on visualization and computer graphics 26 (1), 643-653, 2019 | 10 | 2019 |
| Visual analysis of ligand trajectories in molecular dynamics A Jurčík, K Furmanová, J Byška, V Vonásek, O Vávra, P Ulbrich, H Hauser, ... 2019 IEEE Pacific Visualization Symposium (PacificVis), 212-221, 2019 | 10 | 2019 |
| sMolBoxes: Dataflow model for molecular dynamics exploration P Ulbrich, M Waldner, K Furmanová, SM Marques, D Bednář, B Kozlíková, ... IEEE Transactions on Visualization and Computer Graphics 29 (1), 581-590, 2022 | 9 | 2022 |
| Visual exploration of large normal mode spaces to study protein flexibility P Bedoucha, N Reuter, H Hauser, J Byška Computers & Graphics 90, 73-83, 2020 | 9 | 2020 |
| Unfolding and Interactive Exploration of Protein Tunnels and their Dynamics. I Kolesár, J Byska, J Parulek, H Hauser, B Kozlíková VCBM/MedViz, 1-10, 2016 | 9 | 2016 |
Barbora Kozlikovaassoc. prof., Masaryk UniversityVerified email at fi.muni.cz
