Bora Uyar

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Altuna AkalinMax Delbrück Center for Molecular MedicineVerified email at mdc-berlin.de
Toby GibsonEMBLVerified email at embl.de
Norman E. DaveyInstitute Of Cancer Research, LondonVerified email at icr.ac.uk
Robert J. WeatherittEMBL Australia and Garvan Institute of Medical ResearchVerified email at emblaustralia.org
Aidan BuddTrainer, EMBO Solutions GmbHVerified email at earlham.ac.uk
Vedran FrankeMax Delbrueck CenterVerified email at mdc-berlin.de
Baris TursunUniversity of Hamburg and Max Delbrück Center BerlinVerified email at uni-hamburg.de
Sebastian DieckeStem cell Core Director Max Delbrück Center BerlinVerified email at mdc-berlin.de
Jonathan RonenMax Delbruck Center for Molecular Medicine, BerlinVerified email at mdc-berlin.de
Manjeet KumarBioinformatics Scientist | EMBL HeidelbergVerified email at iitb.ac.in
Nansheng ChenSimon Fraser UniversityVerified email at sfu.ca
Nikolaus RajewskyProfessor, Systems Biology, Max Delbruck Center for Molecular Medicine, BerlinVerified email at mdc-berlin.de
Katrina MeyerPostdoc, Max Planck Institute for Molecular GeneticsVerified email at molgen.mpg.de
Katarzyna WreczyckaMax Delbrück Center for Molecular Medicine in the Helmholtz AssociationVerified email at mdc-berlin.de
Matthias SelbachProfessor, Max Delbruck Center for Molecular MedicineVerified email at mdc-berlin.de
Anna SzymborskaScientist, Max Delbrück Center for Molecular MedicineVerified email at mdc-berlin.de
Holger GerhardtProfessor, Max-Delbrück-Center for Molecular Medicine in the Helmholtz Association (MDC), BerlinVerified email at mdc-berlin.de
Bálint MészárosSt. Jude Children's Research HospitalVerified email at stjude.org
Dosztanyi ZsuzsannaEötvös Loránd UniversityVerified email at ttk.elte.hu
Andreas ZanzoniAix Marseille UniversityVerified email at univ-amu.fr

Bora Uyar

Max Delbrueck Center for Molecular Medicine - The Berlin Institute for Medical Systems Biology

Verified email at mdc-berlin.de

Bioinformatics Omics Computational Biology


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Attributes of short linear motifs NE Davey, K Van Roey, RJ Weatheritt, G Toedt, B Uyar, B Altenberg, ... Molecular BioSystems 8 (1), 268-281, 2012	614	2012
Short linear motifs: ubiquitous and functionally diverse protein interaction modules directing cell regulation K Van Roey, B Uyar, RJ Weatheritt, H Dinkel, M Seiler, A Budd, TJ Gibson, ... Chemical reviews 114 (13), 6733-6778, 2014	448	2014
ELM—the database of eukaryotic linear motifs H Dinkel, S Michael, RJ Weatheritt, NE Davey, K Van Roey, B Altenberg, ... Nucleic acids research 40 (D1), D242-D251, 2012	372	2012
The eukaryotic linear motif resource ELM: 10 years and counting H Dinkel, K Van Roey, S Michael, NE Davey, RJ Weatheritt, D Born, ... Nucleic acids research 42 (D1), D259-D266, 2014	361	2014
ELM 2016—data update and new functionality of the eukaryotic linear motif resource H Dinkel, K Van Roey, S Michael, M Kumar, B Uyar, B Altenberg, ... Nucleic acids research 44 (D1), D294-D300, 2016	335	2016
Mutations in disordered regions can cause disease by creating dileucine motifs K Meyer, M Kirchner, B Uyar, JY Cheng, G Russo, ... Cell 175 (1), 239-253. e17, 2018	125	2018
Degrons in cancer B Mészáros, M Kumar, TJ Gibson, B Uyar, Z Dosztányi Science signaling 10 (470), eaak9982, 2017	124	2017
How pathogens use linear motifs to perturb host cell networks A Via, B Uyar, C Brun, A Zanzoni Trends in biochemical sciences 40 (1), 36-48, 2015	109	2015
genBlastG: using BLAST searches to build homologous gene models R She, JSC Chu, B Uyar, J Wang, K Wang, N Chen Bioinformatics 27 (15), 2141-2143, 2011	109	2011
Proteome-wide analysis of human disease mutations in short linear motifs: neglected players in cancer? B Uyar, RJ Weatheritt, H Dinkel, NE Davey, TJ Gibson Molecular BioSystems 10 (10), 2626-2642, 2014	101	2014
Single-cell analyses of aging, inflammation and senescence B Uyar, D Palmer, A Kowald, HM Escobar, I Barrantes, S Möller, A Akalin, ... Ageing research reviews 64, 101156, 2020	99	2020
FACT sets a barrier for cell fate reprogramming in Caenorhabditis elegans and human cells E Kolundzic, A Ofenbauer, SI Bulut, B Uyar, G Baytek, A Sommermeier, ... Developmental Cell 46 (5), 611-626. e12, 2018	84	2018
PiGx: reproducible genomics analysis pipelines with GNU Guix R Wurmus, B Uyar, B Osberg, V Franke, A Gosdschan, K Wreczycka, ... Gigascience 7 (12), giy123, 2018	66	2018
HOT or not: examining the basis of high-occupancy target regions K Wreczycka, V Franke, B Uyar, R Wurmus, S Bulut, B Tursun, A Akalin Nucleic acids research 47 (11), 5735-5745, 2019	56	2019
Transcriptional repression of NFKBIA triggers constitutive IKK‐ and proteasome‐independent p65/RelA activation in senescence M Kolesnichenko, N Mikuda, UE Höpken, E Kärgel, B Uyar, AB Tufan, ... The EMBO journal 40 (6), e104296, 2021	42	2021
RNA-seq analysis of the C. briggsae transcriptome B Uyar, JSC Chu, IA Vergara, SY Chua, MR Jones, T Wong, DL Baillie, ... Genome research 22 (8), 1567-1580, 2012	35	2012
Identifying tumor cells at the single-cell level using machine learning J Dohmen, A Baranovskii, J Ronen, B Uyar, V Franke, A Akalin Genome Biology 23 (1), 123, 2022	29	2022
Computational genomics with R A Akalin Chapman and Hall/CRC, 2020	28	2020
RCAS: an RNA centric annotation system for transcriptome-wide regions of interest B Uyar, D Yusuf, R Wurmus, N Rajewsky, U Ohler, A Akalin Nucleic acids research 45 (10), e91-e91, 2017	28	2017
The IκB kinase complex is a regulator of mRNA stability N Mikuda, M Kolesnichenko, P Beaudette, O Popp, B Uyar, W Sun, ... The EMBO journal 37 (24), e98658, 2018	27	2018

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