Srinivas Aluru

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Chirag JainIndian Institute of ScienceVerified email at iisc.ac.in
Sriram P ChockalingamSenior Research ScientistVerified email at gatech.edu
Jaroslaw ZolaAssociate Professor of Computer Science, University at Buffalo, SUNYVerified email at buffalo.edu
Patrick SchnableIowa State UniversityVerified email at iastate.edu
Xiao YangGeneGenieDx CorpVerified email at broadinstitute.org
Ananth KalyanaramanWashington State University, Pacific Northwest National LaboratoryVerified email at wsu.edu
Sanchit MisraParallel Computing Lab, Intel LabsVerified email at intel.com
Sharma V. ThankachanNorth Carolina State UniversityVerified email at ncsu.edu
Fatih Erdogan SevilgenBoğaziçi UniversityVerified email at boun.edu.tr
Abhinav SarjeTenstorrentVerified email at lbl.gov
Tony PanEmory UniversityVerified email at emory.edu
David A. BaderDistinguished Professor, New Jersey Institute of TechnologyVerified email at njit.edu
Indranil RoyNatural Intelligence SemiconductorsVerified email at naturalintelligence.ai
Scott EmrichAssociate Professor, University of Tennessee (EECS)Verified email at utk.edu
Patrick FlickGeorgia Institute of TechnologyVerified email at gatech.edu
Olga H NikolovaOregon Health & Science UniversityVerified email at acm.org
Alexandros StamatakisFoundation for Research and Technology - Hellas, HITS gGmbH, KITVerified email at ics.forth.gr
B. ShankerProfessor and Chair of ECE, The Ohio State UniversityVerified email at ece.osu.edu
Arun SomaniProfessor of electrical and Computer Engineering, Iowa State UniversityVerified email at iastate.edu
Srikanta TirthapuraProfessor of Computer Engineering, Iowa State UniversityVerified email at iastate.edu

Srinivas Aluru

Regents Professor and Executive Director of Institute for Data Engineering and Science, Georgia Tech

Verified email at cc.gatech.edu - Homepage

Data Science High performance Computing Computational Biology Combinatorial Scientific Computing


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The B73 maize genome: complexity, diversity, and dynamics PS Schnable, D Ware, RS Fulton, JC Stein, F Wei, S Pasternak, C Liang, ... science 326 (5956), 1112-1115, 2009	4414	2009
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries C Jain, LM Rodriguez-R, AM Phillippy, KT Konstantinidis, S Aluru Nature communications 9 (1), 5114, 2018	2610	2018
Efficient architecture-aware acceleration of BWA-MEM for multicore systems M Vasimuddin, S Misra, H Li, S Aluru 2019 IEEE international parallel and distributed processing symposium (IPDPS …, 2019	656	2019
A brassinosteroid transcriptional network revealed by genome‐wide identification of BESI target genes in Arabidopsis thaliana X Yu, L Li, J Zola, M Aluru, H Ye, A Foudree, H Guo, S Anderson, S Aluru, ... The Plant Journal 65 (4), 634-646, 2011	634	2011
PCAP: a whole-genome assembly program X Huang, J Wang, S Aluru, SP Yang, LD Hillier Genome research 13 (9), 2164-2170, 2003	405	2003
Space efficient linear time construction of suffix arrays P Ko, S Aluru Annual Symposium on Combinatorial Pattern Matching, 200-210, 2003	399	2003
A survey of error-correction methods for next-generation sequencing X Yang, SP Chockalingam, S Aluru Briefings in bioinformatics 14 (1), 56-66, 2013	325	2013
Handbook of computational molecular biology S Aluru CRC Press, 2005	266	2005
Space efficient linear time construction of suffix arrays P Ko, S Aluru Journal of Discrete Algorithms 3 (2-4), 143-156, 2005	221	2005
RD26 mediates crosstalk between drought and brassinosteroid signalling pathways H Ye, S Liu, B Tang, J Chen, Z Xie, TM Nolan, H Jiang, H Guo, HY Lin, ... Nature Communications 8 (1), 14573, 2017	206	2017
Reptile: representative tiling for short read error correction X Yang, KS Dorman, S Aluru Bioinformatics 26 (20), 2526-2533, 2010	196	2010
Mechanisms and networks for brassinosteroid regulated gene expression H Guo, L Li, M Aluru, S Aluru, Y Yin Current opinion in plant biology 16 (5), 545-553, 2013	173	2013
Large-scale maximum likelihood-based phylogenetic analysis on the IBM BlueGene/L M Ott, J Zola, A Stamatakis, S Aluru Proceedings of the 2007 ACM/IEEE conference on Supercomputing, 1-11, 2007	166	2007
A fast adaptive algorithm for computing whole-genome homology maps C Jain, S Koren, A Dilthey, AM Phillippy, S Aluru Bioinformatics 34 (17), i748-i756, 2018	131	2018
Parallel biological sequence comparison using prefix computations S Aluru, N Futamura, K Mehrotra Journal of Parallel and Distributed Computing 63 (3), 264-272, 2003	131	2003
Parallel domain decomposition and load balancing using space-filling curves S Aluru, FE Sevilgen Proceedings fourth international conference on high-performance computing …, 1997	125	1997
Space and time optimal parallel sequence alignments S Rajko, S Aluru IEEE Transactions on Parallel and Distributed Systems 15 (12), 1070-1081, 2004	121	2004
Discovering motifs in biological sequences using the micron automata processor I Roy, S Aluru IEEE/ACM transactions on computational biology and bioinformatics 13 (1), 99-111, 2015	117*	2015
Efficient clustering of large EST data sets on parallel computers A Kalyanaraman, S Aluru, S Kothari, V Brendel Nucleic Acids Research 31 (11), 2963-2974, 2003	116	2003
A fast approximate algorithm for mapping long reads to large reference databases C Jain, A Dilthey, S Koren, S Aluru, AM Phillippy International Conference on Research in Computational Molecular Biology, 66-81, 2017	111	2017

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