Robert B. Scharpf
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Tackling the widespread and critical impact of batch effects in high-throughput data
JT Leek, RB Scharpf, HC Bravo, D Simcha, B Langmead, WE Johnson, ...
Nature Reviews Genetics 11 (10), 733-739, 2010
Genome-wide association study of blood pressure and hypertension
D Levy, GB Ehret, K Rice, GC Verwoert, LJ Launer, A Dehghan, ...
Nature genetics 41 (6), 677-687, 2009
Multiple loci associated with indices of renal function and chronic kidney disease
A Köttgen, NL Glazer, A Dehghan, SJ Hwang, R Katz, M Li, Q Yang, ...
Nature genetics 41 (6), 712-717, 2009
Neoadjuvant PD-1 blockade in resectable lung cancer
PM Forde, JE Chaft, KN Smith, V Anagnostou, TR Cottrell, MD Hellmann, ...
New England Journal of Medicine 378 (21), 1976-1986, 2018
Detectable clonal mosaicism from birth to old age and its relationship to cancer
CC Laurie, CA Laurie, K Rice, KF Doheny, LR Zelnick, CP McHugh, ...
Nature genetics 44 (6), 642-650, 2012
Direct detection of early-stage cancers using circulating tumor DNA
J Phallen, M Sausen, V Adleff, A Leal, C Hruban, J White, V Anagnostou, ...
Science translational medicine 9 (403), 2017
Evolution of neoantigen landscape during immune checkpoint blockade in non–small cell lung cancer
V Anagnostou, KN Smith, PM Forde, N Niknafs, R Bhattacharya, J White, ...
Cancer discovery 7 (3), 264-276, 2017
The genomic landscape of response to EGFR blockade in colorectal cancer
A Bertotti, E Papp, S Jones, V Adleff, V Anagnostou, B Lupo, M Sausen, ...
Nature 526 (7572), 263-267, 2015
Clinical implications of genomic alterations in the tumour and circulation of pancreatic cancer patients.
Nature Communications 6, 2015
High grade serous ovarian carcinomas originate in the fallopian tube
SI Labidi-Galy, E Papp, D Hallberg, N Niknafs, V Adleff, M Noe, ...
Nature communications 8 (1), 1-11, 2017
Pre-processing Agilent microarray data
M Zahurak, G Parmigiani, W Yu, RB Scharpf, D Berman, E Schaeffer, ...
BMC bioinformatics 8 (1), 142, 2007
Regulation of platelet granule exocytosis by S-nitrosylation
CN Morrell, K Matsushita, K Chiles, RB Scharpf, M Yamakuchi, ...
Proceedings of the National Academy of Sciences 102 (10), 3782-3787, 2005
Using the R package crlmm for genotyping and copy number estimation
RB Scharpf, RA Irizarry, ME Ritchie, B Carvalho, I Ruczinski
Journal of statistical software 40 (12), 1, 2011
Genome-wide cell-free DNA fragmentation in patients with cancer
S Cristiano, A Leal, J Phallen, J Fiksel, V Adleff, DC Bruhm, SØ Jensen, ...
Nature 570 (7761), 385-389, 2019
Leukocytes can enhance platelet-mediated aggregation and thromboxane release via interaction of P-selectin glycoprotein ligand 1 with P-selectin
N Faraday, RB Scharpf, JM Dodd-o, EA Martinez, BA Rosenfeld, ...
Anesthesiology: The Journal of the American Society of Anesthesiologists 94 …, 2001
Hidden Markov models for the assessment of chromosomal alterations using high-throughput SNP arrays
RB Scharpf, G Parmigiani, J Pevsner, I Ruczinski
The annals of applied statistics 2 (2), 687, 2008
MACROD2 overexpression mediates estrogen independent growth and tamoxifen resistance in breast cancers
M Mohseni, J Cidado, S Croessmann, K Cravero, A Cimino-Mathews, ...
Proceedings of the National Academy of Sciences 111 (49), 17606-17611, 2014
When should one subtract background fluorescence in 2-color microarrays?
RB Scharpf, CA Iacobuzio-Donahue, JB Sneddon, G Parmigiani
Biostatistics 8 (4), 695-707, 2007
A Bayesian model for cross-study differential gene expression
RB Scharpf, H Tjelmeland, G Parmigiani, AB Nobel
Journal of the American Statistical Association 104 (488), 1295-1310, 2009
A multilevel model to address batch effects in copy number estimation using SNP arrays
RB Scharpf, I Ruczinski, B Carvalho, B Doan, A Chakravarti, RA Irizarry
Biostatistics 12 (1), 33-50, 2011
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Articles 1–20