| Dynamic imaging of genomic loci in living human cells by an optimized CRISPR/Cas system B Chen, LA Gilbert, BA Cimini, J Schnitzbauer, W Zhang, GW Li, J Park, ... Cell 155 (7), 1479-1491, 2013 | 1975 | 2013 |
| CellProfiler 3.0: Next-generation image processing for biology C McQuin, A Goodman, V Chernyshev, L Kamentsky, BA Cimini, ... PLoS biology 16 (7), e2005970, 2018 | 1382 | 2018 |
| Genetic and transcriptional evolution alters cancer cell line drug response U Ben-David, B Siranosian, G Ha, H Tang, Y Oren, K Hinohara, ... Nature 560 (7718), 325-330, 2018 | 652 | 2018 |
| Nucleus segmentation across imaging experiments: the 2018 Data Science Bowl JC Caicedo, A Goodman, KW Karhohs, BA Cimini, J Ackerman, ... Nature methods 16 (12), 1247-1253, 2019 | 370 | 2019 |
| CellProfiler 4: improvements in speed, utility and usability DR Stirling, MJ Swain-Bowden, AM Lucas, AE Carpenter, BA Cimini, ... BMC Bioinformatics 22 (1), 1-11, 2021 | 196 | 2021 |
| Visualization of actin filaments and monomers in somatic cell nuclei BJ Belin, BA Cimini, EH Blackburn, RD Mullins Molecular biology of the cell 24 (7), 982-994, 2013 | 153 | 2013 |
| Common limitations of image processing metrics: A picture story A Reinke, MD Tizabi, CH Sudre, M Eisenmann, T Rädsch, M Baumgartner, ... arXiv preprint arXiv:2104.05642, 2021 | 77 | 2021 |
| Open-source deep-learning software for bioimage segmentation AM Lucas, PV Ryder, B Li, BA Cimini, KW Eliceiri, AE Carpenter Molecular Biology of the Cell 32 (9), 823-829, 2021 | 37 | 2021 |
| CellProfiler Analyst 3.0: accessible data exploration and machine learning for image analysis DR Stirling, AE Carpenter, BA Cimini Bioinformatics 37 (21), 3992-3994, 2021 | 31 | 2021 |
| In situ visualization of telomere elongation patterns in human cells ME Diolaiti, BA Cimini, R Kageyama, FA Charles, BA Stohr Nucleic acids research 41 (18), e176-e176, 2013 | 31 | 2013 |
| Metrics reloaded: Pitfalls and recommendations for image analysis validation L Maier-Hein, A Reinke, E Christodoulou, B Glocker, P Godau, F Isensee, ... arXiv preprint arXiv:2206.01653, 2022 | 26 | 2022 |
| Role of acetylcholine in nitric oxide production in the salamander retina BA Cimini, CE Strang, VE Wotring, KT Keyser, WD Eldred Journal of Comparative Neurology 507 (6), 1952-1963, 2008 | 24 | 2008 |
| Control of osteocyte dendrite formation by Sp7 and its target gene osteocrin JS Wang, T Kamath, CM Mazur, F Mirzamohammadi, D Rotter, H Hojo, ... Nature Communications 12 (1), 1-20, 2021 | 22 | 2021 |
| Scientific Community Image Forum: A discussion forum for scientific image software CT Rueden, J Ackerman, ET Arena, J Eglinger, BA Cimini, A Goodman, ... PLoS biology 17 (6), e3000340, 2019 | 18 | 2019 |
| Morphology and gene expression profiling provide complementary information for mapping cell state GP Way, T Natoli, A Adeboye, L Litichevskiy, A Yang, X Lu, JC Caicedo, ... Cell Systems, 2022 | 15 | 2022 |
| High-dimensional gene expression and morphology profiles of cells across 28,000 genetic and chemical perturbations M Haghighi, JC Caicedo, BA Cimini, AE Carpenter, S Singh Nature Methods, 1-8, 2022 | 14 | 2022 |
| ImageJ and CellProfiler: Complements in Open‐Source Bioimage Analysis ETA Dobson, B Cimini, AH Klemm, C Wählby, AE Carpenter, KW Eliceiri Current Protocols 1 (5), e89, 2021 | 14 | 2021 |
| Preliminary development of an assay for detection of TERT expression, telomere length, and telomere elongation in single cells A Ravindranathan, B Cimini, ME Diolaiti, BA Stohr PloS one 13 (12), e0206525, 2018 | 10 | 2018 |
| Three million images and morphological profiles of cells treated with matched chemical and genetic perturbations SN Chandrasekaran, BA Cimini, A Goodale, L Miller, M Kost-Alimova, ... bioRxiv, 2022 | 9 | 2022 |
| Molecular diversity of glutamatergic and GABAergic synapses from multiplexed fluorescence imaging E Danielson, KP de Arce, B Cimini, EC Wamhoff, S Singh, JR Cottrell, ... Eneuro 8 (1), 2021 | 9 | 2021 |
Anne E. CarpenterInstitute Scientist and Imaging Platform Director, Broad Institute of Harvard and MITVerified email at broadinstitute.org
