| Systematic comparison of phenome-wide association study of electronic medical record data and genome-wide association study data JC Denny, L Bastarache, MD Ritchie, RJ Carroll, R Zink, JD Mosley, ... Nature biotechnology 31 (12), 1102-1111, 2013 | 934 | 2013 |
| MedEx: a medication information extraction system for clinical narratives H Xu, SP Stenner, S Doan, KB Johnson, LR Waitman, JC Denny Journal of the American Medical Informatics Association 17 (1), 19-24, 2010 | 610 | 2010 |
| Data from clinical notes: a perspective on the tension between structure and flexible documentation ST Rosenbloom, JC Denny, H Xu, N Lorenzi, WW Stead, KB Johnson Journal of the American Medical Informatics Association 18 (2), 181-186, 2011 | 402 | 2011 |
| CLAMP–a toolkit for efficiently building customized clinical natural language processing pipelines E Soysal, J Wang, M Jiang, Y Wu, S Pakhomov, H Liu, H Xu Journal of the American Medical Informatics Association 25 (3), 331-336, 2018 | 349 | 2018 |
| A systematic analysis of FDA-approved anticancer drugs J Sun, Q Wei, Y Zhou, J Wang, Q Liu, H Xu BMC systems biology 11 (5), 1-17, 2017 | 313 | 2017 |
| A study of machine-learning-based approaches to extract clinical entities and their assertions from discharge summaries M Jiang, Y Chen, M Liu, ST Rosenbloom, S Mani, JC Denny, H Xu Journal of the American Medical Informatics Association 18 (5), 601-606, 2011 | 309 | 2011 |
| The CHEMDNER corpus of chemicals and drugs and its annotation principles M Krallinger, O Rabal, F Leitner, M Vazquez, D Salgado, Z Lu, R Leaman, ... J Cheminform 7 (Suppl 1), S2, 2015 | 300 | 2015 |
| Deep learning in clinical natural language processing: a methodical review S Wu, K Roberts, S Datta, J Du, Z Ji, Y Si, S Soni, Q Wang, Q Wei, Y Xiang, ... Journal of the American Medical Informatics Association, 2019 | 289 | 2019 |
| Enhancing clinical concept extraction with contextual embeddings Y Si, J Wang, H Xu, K Roberts Journal of the American Medical Informatics Association 26 (11), 1297-1304, 2019 | 282 | 2019 |
| Large-scale prediction of adverse drug reactions using chemical, biological, and phenotypic properties of drugs M Liu, Y Wu, Y Chen, J Sun, Z Zhao, X Chen, ME Matheny, H Xu Journal of the American Medical Informatics Association 19 (e1), e28-e35, 2012 | 274 | 2012 |
| Automated acquisition of disease-drug knowledge from biomedical and clinical documents: An initial study ES Chen, G Hripcsak, H Xu, M Markatou, C Friedman Journal of the American Medical Informatics Association 15 (1), 87-98, 2008 | 254 | 2008 |
| Validating drug repurposing signals using electronic health records: a case study of metformin associated with reduced cancer mortality H Xu, MC Aldrich, Q Chen, H Liu, NB Peterson, Q Dai, M Levy, A Shah, ... Journal of the American Medical Informatics Association 22 (1), 179-191, 2015 | 236 | 2015 |
| Portability of an algorithm to identify rheumatoid arthritis in electronic health records RJ Carroll, WK Thompson, AE Eyler, AM Mandelin, T Cai, RM Zink, ... Journal of the American Medical Informatics Association, amiajnl-2011-000583, 2012 | 235 | 2012 |
| Named entity recognition in Chinese clinical text using deep neural network Y Wu, M Jiang, J Lei, H Xu Studies in health technology and informatics 216, 624, 2015 | 203 | 2015 |
| The emerging role of electronic medical records in pharmacogenomics RA Wilke, H Xu, JC Denny, DM Roden, RM Krauss, CA McCarty, ... Clinical Pharmacology & Therapeutics 89 (3), 379-386, 2011 | 199 | 2011 |
| Entity recognition from clinical texts via recurrent neural network Z Liu, M Yang, X Wang, Q Chen, B Tang, Z Wang, H Xu BMC medical informatics and decision making 17 (2), 67, 2017 | 198 | 2017 |
| Optimizing drug outcomes through pharmacogenetics: a case for preemptive genotyping JS Schildcrout, JC Denny, E Bowton, W Gregg, JM Pulley, MA Basford, ... Clinical Pharmacology & Therapeutics 92 (2), 235-242, 2012 | 195 | 2012 |
| A comprehensive study of named entity recognition in Chinese clinical text J Lei, B Tang, X Lu, K Gao, M Jiang, H Xu Journal of the American Medical Informatics Association, amiajnl-2013-002381, 2013 | 193 | 2013 |
| A publicly available benchmark for biomedical dataset retrieval: the reference standard for the 2016 bioCADDIE dataset retrieval challenge T Cohen, K Roberts, AE Gururaj, X Chen, S Pournejati, G Alter, WR Hersh, ... Database 2017, 2017 | 181 | 2017 |
| Evaluating Word Representation Features in Biomedical Named Entity Recognition Tasks B Tang, H Cao, X Wang, Q Chen, H Xu BioMed Research International 2014, 2014 | 169 | 2014 |
Joshua C. DennyCEO, All of Us Research ProgramVerified email at nih.gov
